Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04290 ATGAAGAGAAGACCGATTGATCCTTTTGTTGGCCGTTTAAGTTCCTTTTTCATATTCCTTTTCTATGCTAGTTTATGCTTTGCCAATCGCGATATGGAAGCGCTGTTAAAGATTAAGAGTTCAATGATCGGACCGGGGAGGTCGGAGCTTGGTGATTGGGAGCCGTCCCCAACGTCGTCTCCGTCTGCTCATTGTGATTTCTCTGGTGTTACTTGCGATGGTGATAATAGAGTTGTTGCGCTTAACGTTTCCAATCTCCGTTTATTTAGCTCGATTCCGCCGGAGATTGGAATGTTGGAGAAGATTGAGAACTTGACTTTAGTGAGCAACAATCTAACTGGAAAGCTTCCTCTTGAAATGGCGAAACTCACGTCGCTTAAGTTTCTTAACCTATCTAACAATGCATTTCGTGATAATTTAACGGCTGAAATCACGGTAGAAATGACGGAACTGGAGGTTTTTGATATCTATAACAATAATTTCTTCGGTCTGCTTCCGGTGGAATTTGTGAAATTGAAGAAGCTCAAGCATCTTGACCTTGGCGGTTGCTTCTTTACTGGTCAAATTCCTGCTGTTTACTCGGAGATGCAGTCGTTGGAGTTCTTGAGCGTTCGGGGAAACATGCTTACCGGAAGGATTCCAGCGAGTTTGGGGCGGTTGAAGAATCTTAGGTATCTGTACGCCGGATATTTTAATCATTACGACGGAGGTATTCCTGCAGAGTTTGGATCCTTGAGTTCCCTTGAGCTTATCGATTTAGCTAACTGTAACCTCACTGGTGAAATTCCTCCGAGTTTGGGGAATTTGAAGCACTTGCATAGTCTATTTCTACAAGTAAACAATCTTACTGGTCGGATTCCGTCTGAACTTTCCGGACTGATTAGCCTCAAGTCATTGGACCTCTCGCTGAACGAACTAACCGGAGAGATACCGTCGAGTTTCGTTGCGCTGCAGAATCTTACGCTGATCAATTTGTTCAATAACAAACTTCATGGTCCAATTCCTGGTTTTGTCGGTGATTTTCCTCATCTAGAAGTGCTTCAGTTATGGAATAACAACTTCACGCTCGAGCTCCCCGAGAATCTCGGGCGTAACAGCAAGCTGTTTCTGCTCGATGTGGCGACTAATCATCTAACTGGCCTCATTCCTCCCGATTTATGTAATGGTAGGTTAAAGACTTTGATTCTTCTAGATAATTACTTCTTTGGGCCCATCCCTGAGAAATTAGGCCGGTGTGATTCGCTTACGAAAATAAGAATTGCGGGAAATTTCTTCAATGGAACGGTTCCGGCAGGGTTCTTCAACTTTCCGGCGTTGGAGCAACTCGATATCAGTAACAATTACTTCTCCGGGGCTCTTCCGGCGCAAATGTCAGGGGAGTTTCTTGGAAGTCTACTGCTTAGTAACAACCATATCACCGGGGACATCCCGGCGGCGATTAAGAATTTAGAGAACTTGCAGGTTGTTTCTCTGGAACATAACCAATTCACCGGGAATTTGCCCAAGGAAATATTTCAATTAAACAAGTTGCTGAGGATTAACATCAGCTTTAACAATATTAGCGGCGAAATTCCGTATTCGGTTGTTCAGTGCACTTCGTTAACGTTAGTTGATCTCAGCGAAAATTATCTTGTTGGCGTAATTCCCAGAGGAATTTCGAAGCTGAAAATCTTGAGCGTCCTCAATTTGTCTAGAAATCACTTGACAGGCCAAATTCCGAACGAGATTCGGTCGATGATGAGTCTGACAACTCTTGATTTGTCTTACAACAATTTCTTCGGCAAAATCCCCTCCGGCGGTCAGTTTTCTGTATTCAACGTCAGTGCATTCATCGGAAACCCTAATCTCTGCTTCCCCAACCATGGGCCATGCGCATCTTTACGTAAGAATTCAAAATATGTTAAACTAATCATCCCAATCGTCGCGATATTCATCGTTCTGTTATGTGTACTCACTGCACTTTATCTCCGGAAGAGAAAGAAGATTCAGAAATCTAAGGCGTGGAAACTCACAGCGTTCCAACGCCTCAACTTCAAAGCAGAGGACGTCCTGGAATGCTTGAAGGATGAAAATATCATCGGGAAAGGCGGAGCCGGAGTAGTCTATCGTGGATCAATGCCAGACGGCTCCGTCGTGGCTATTAAACTGTTATTAGGAAGCGGCCGGAACGACCACGGTTTCTCTGCTGAAATTCAGACGCTAGGGCGAATCAAACACCGGAATATCGTCAGGCTTTTGGGGTACGTGTCGAACAGAGACACGAATCTGCTTCTGTACGAGTACATGCCTAATGGTAGCTTGGATCAGAGCCTGCATGGAGTGAAGGGCGGTCATTTGCATTGGGACTTGCGGTACAAGATCGCCATAGAAGCCGCTAAGGGACTCTGTTACTTGCACCATGATTGTACGCCGTTGATCATTCACAGAGACGTGAAATCCAACAATATACTGCTGGACAAGCTGTTTGAGGCACATGTCTCTGACTTTGGGCTCGCCAAGTTCTTGCAAAACGGCGGCGCCTCCGAGTGTATGTCCTCCATTGCGGGCTCCTATGGCTACATCGCTCCAGTTATTTCTTAG 2580 45.12 MKRRPIDPFVGRLSSFFIFLFYASLCFANRDMEALLKIKSSMIGPGRSELGDWEPSPTSSPSAHCDFSGVTCDGDNRVVALNVSNLRLFSSIPPEIGMLEKIENLTLVSNNLTGKLPLEMAKLTSLKFLNLSNNAFRDNLTAEITVEMTELEVFDIYNNNFFGLLPVEFVKLKKLKHLDLGGCFFTGQIPAVYSEMQSLEFLSVRGNMLTGRIPASLGRLKNLRYLYAGYFNHYDGGIPAEFGSLSSLELIDLANCNLTGEIPPSLGNLKHLHSLFLQVNNLTGRIPSELSGLISLKSLDLSLNELTGEIPSSFVALQNLTLINLFNNKLHGPIPGFVGDFPHLEVLQLWNNNFTLELPENLGRNSKLFLLDVATNHLTGLIPPDLCNGRLKTLILLDNYFFGPIPEKLGRCDSLTKIRIAGNFFNGTVPAGFFNFPALEQLDISNNYFSGALPAQMSGEFLGSLLLSNNHITGDIPAAIKNLENLQVVSLEHNQFTGNLPKEIFQLNKLLRINISFNNISGEIPYSVVQCTSLTLVDLSENYLVGVIPRGISKLKILSVLNLSRNHLTGQIPNEIRSMMSLTTLDLSYNNFFGKIPSGGQFSVFNVSAFIGNPNLCFPNHGPCASLRKNSKYVKLIIPIVAIFIVLLCVLTALYLRKRKKIQKSKAWKLTAFQRLNFKAEDVLECLKDENIIGKGGAGVVYRGSMPDGSVVAIKLLLGSGRNDHGFSAEIQTLGRIKHRNIVRLLGYVSNRDTNLLLYEYMPNGSLDQSLHGVKGGHLHWDLRYKIAIEAAKGLCYLHHDCTPLIIHRDVKSNNILLDKLFEAHVSDFGLAKFLQNGGASECMSSIAGSYGYIAPVIS* 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37558642 37562279 - CsaV3_3G045960.1 Csa03g04290 525195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04290 859 SUPERFAMILY RNI-like 81 425 - -
Csa03g04290 859 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 15 856 - -
Csa03g04290 859 Pfam Leucine rich repeat 533 592 IPR001611 GO:0005515
Csa03g04290 859 Pfam Leucine rich repeat 271 330 IPR001611 GO:0005515
Csa03g04290 859 Pfam Leucine rich repeat 464 520 IPR001611 GO:0005515
Csa03g04290 859 Gene3D Ribonuclease Inhibitor 233 337 IPR032675 -
Csa03g04290 859 Gene3D Transferase(Phosphotransferase) domain 1 762 858 - -
Csa03g04290 859 Pfam Leucine rich repeat N-terminal domain 28 73 IPR013210 -
Csa03g04290 859 Gene3D Ribonuclease Inhibitor 338 633 IPR032675 -
Csa03g04290 859 PANTHER UNNAMED PRODUCT 15 856 - -
Csa03g04290 859 Pfam Leucine Rich Repeat 174 190 IPR001611 GO:0005515
Csa03g04290 859 Pfam Leucine Rich Repeat 247 269 IPR001611 GO:0005515
Csa03g04290 859 SMART LRR_typ_2 123 147 IPR003591 -
Csa03g04290 859 SMART LRR_typ_2 483 507 IPR003591 -
Csa03g04290 859 SMART LRR_typ_2 341 365 IPR003591 -
Csa03g04290 859 SMART LRR_typ_2 148 171 IPR003591 -
Csa03g04290 859 SMART LRR_typ_2 555 579 IPR003591 -
Csa03g04290 859 SMART LRR_typ_2 196 220 IPR003591 -
Csa03g04290 859 SMART LRR_typ_2 245 269 IPR003591 -
Csa03g04290 859 SMART LRR_typ_2 293 317 IPR003591 -
Csa03g04290 859 Pfam Protein kinase domain 689 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04290 859 SUPERFAMILY Protein kinase-like (PK-like) 678 856 IPR011009 -
Csa03g04290 859 ProSiteProfiles Protein kinase domain profile. 687 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04290 859 SUPERFAMILY L domain-like 391 622 - -
Csa03g04290 859 ProSitePatterns Serine/Threonine protein kinases active-site signature. 806 818 IPR008271 GO:0004672|GO:0006468
Csa03g04290 859 SMART serkin_6 687 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04290 859 Gene3D Phosphorylase Kinase; domain 1 652 761 - -
Csa03g04290 859 Gene3D Ribonuclease Inhibitor 27 145 IPR032675 -
Csa03g04290 859 Gene3D Ribonuclease Inhibitor 146 232 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04290 Csa-Chr3:37558642 Csa06g03067 Csa-Chr6:26338997 0 dispersed
Csa03g04290 Csa-Chr3:37558642 Csa06g03068 Csa-Chr6:26350693 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78087 PF00069 Pkinase 4.80E-31 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04290 K00924 - csv:101221360 1703.34