Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04297 ATGGGGAAGGCTACCGATTTTTCGTCTAATCATCGTTCGCCAAGTGGAACTAGTCTTGCCGGCGATAATACCAACAGCTCTGAGTTCCGGAGGAAGAATCTTCAGTCTCCGTGGGCTCAAGTCGTCCGTGGTGAGCCAGAATCGATCTCACCCGTCGATCAGTCCCAGCTATCGTCCTCTTCGTCATCCTTGTCTTCGCTTGCGGTTTCCGCTACAGAAACCCCTGCTCCTGCCTCCCCGCCGTCGGATAACTTTACGTCTTCCGAGAACTGCGACGCGAATGACGGTAATGCAGCGTCGAAGAAACAGGCTTGGAACAAGCCTACGAATGGCGTCGTTGAGGGTGGTTCTGTAATGGGGGCAGACTCTTGGCCTGCTCTCGCGGAATCCGCGAGGGCTTCACCCAAATTAACAGTTGATTCTCCTCCGAAGGTTACCGTCGAAGTAGCAGTCCCTCCTTCTCAGGGACCTATCAATGTACCTCCTCAGCGACAAGCTACAAATAATGCCAAATCGAACCCGACTCTGAAGAATCCAGTGGTTGCTCGGCGATCCTCAAGGCGGGGTGGTGGTGGTGGTGGCAGCTCAGTGGGAGGGCCTCGAGGCGGCTATTATCGCCCTCCGCCACCTCCACCACCACCTCCCCCACCCCCCTTTCCTGTTTTTCAAGTTTCTCCAAATAGTTATTGTAATATGATACCAGCAATTCCTGATCCTTCTTCAGGAGAACCACTGTTCAGGAGCCCTAATTGGGATCCGCGGGCTGTTGCAGGCTTTGTGCCTCAATTAAATTTTGGTACTGATCACCGAAACTTCTTTCCTAGGGGGAATTTTCCCCTCCATCCTCGTGGTGATAGTCACTACCATAACAATCGTGGGGGAAAACGTGGTCAAGATCGTGGAATATATTTTAATGCTCGAGATGCTCATTTTCAGCAGCACAGGCCTCATACTAGAGGCTTTATGAGGCCTTTGCCACCTTTCACTGGTCAGTTTCCCCAGGGTGTTAGACCTCACCTGAATCCCATGGCTCATCCAGAGTTTGTCTACGTCCCTACATTGCCCTTGGAGGCGTACAGAGGTGGCCTGCCTTTCATGCCACGACCTGCAATGAACTATCCTACTGTAGATCCCACTCTGTCTGCATCAATAGTTAAGCAGATTGAATATTATTTCAGTGATGGTAATTTGGTAAAAGATGATTATTTAAGGTCCCAGATGGACGATCAAGGCTGGGTGCCAATTTCTCTGATAGCTACCTTCCCTATGGTACTGAGTCTGACAAACAATATTCAATGGATAGTAGAATCCTTGAGAACGTCTACTGAAGTGGAAGTTCAGGATTATAAGATCAGACGGAGAAATGAGTGGAAGAAATGGACAACTAAATCCAATTGGTTTAGAACTGATTTGGTCTCTTCTGCTTCAAGTGGATCAACTCATGATAGTCTAGCAACTTCTTTTCAAAGGGTCAGAGTGGATGAAGGGACGAACCAAAGTATGACCAATGATACTGATCCTCATAACGCCGAGCGTACTACTGAGTTACAATCTTCCGAGTCAGGTGATTGTTCACAACTTACTAATGGTGAGGCGAATCAGGATGTTCAGACTGATATCTGA 1623 48.68 MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGNAASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNPVVARRSSRRGGGGGGSSVGGPRGGYYRPPPPPPPPPPPPFPVFQVSPNSYCNMIPAIPDPSSGEPLFRSPNWDPRAVAGFVPQLNFGTDHRNFFPRGNFPLHPRGDSHYHNNRGGKRGQDRGIYFNARDAHFQQHRPHTRGFMRPLPPFTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLPFMPRPAMNYPTVDPTLSASIVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLRTSTEVEVQDYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSFQRVRVDEGTNQSMTNDTDPHNAERTTELQSSESGDCSQLTNGEANQDVQTDI* 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37620313 37625573 - CsaV3_3G046030.1 Csa03g04297 525202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04297 540 MobiDBLite consensus disorder prediction 514 540 - -
Csa03g04297 540 Gene3D - 372 464 IPR036388 -
Csa03g04297 540 PANTHER LUPUS LA PROTEIN-RELATED 27 519 IPR045180 -
Csa03g04297 540 MobiDBLite consensus disorder prediction 488 540 - -
Csa03g04297 540 SUPERFAMILY Winged helix DNA-binding domain 374 462 IPR036390 -
Csa03g04297 540 ProSiteProfiles La-type HTH domain profile. 374 463 IPR006630 -
Csa03g04297 540 PANTHER LA-RELATED PROTEIN 1B 27 519 - -
Csa03g04297 540 MobiDBLite consensus disorder prediction 160 180 - -
Csa03g04297 540 MobiDBLite consensus disorder prediction 488 507 - -
Csa03g04297 540 MobiDBLite consensus disorder prediction 203 221 - -
Csa03g04297 540 MobiDBLite consensus disorder prediction 49 107 - -
Csa03g04297 540 SMART la 378 454 IPR006630 -
Csa03g04297 540 Pfam La domain 384 439 IPR006630 -
Csa03g04297 540 MobiDBLite consensus disorder prediction 1 34 - -
Csa03g04297 540 MobiDBLite consensus disorder prediction 1 221 - -
Csa03g04297 540 CDD LAM 384 453 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04297 K18757 LARP1; la-related protein 1 - csv:101220887 990.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04297 Csa-Chr3:37620313 Csa06g03355 Csa-Chr6:27974126 3.58E-43 dispersed
Csa02g01201 Csa-Chr2:11807087 Csa03g04297 Csa-Chr3:37620313 2.71E-08 transposed
Csa02g02288 Csa-Chr2:20427062 Csa03g04297 Csa-Chr3:37620313 4.57E-08 transposed
Csa04g01223 Csa-Chr4:10850746 Csa03g04297 Csa-Chr3:37620313 1.00E-23 transposed
Csa07g01133 Csa-Chr7:11073599 Csa03g04297 Csa-Chr3:37620313 8.45E-10 transposed
Csa03g04297 Csa-Chr3:37620313 Csa06g03354 Csa-Chr6:27963675 7.40E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1168 . Blo12g00877 . Bda03g00295 . . Bma04g00255 . . . Cma01g01985 . Car01g01556 . . . . . . . . . . . . . . . . . . . Cone7ag1906 Cone17ag1422 Cone20ag0060 Lsi04g01766 Csa03g04297 Chy04g00400 . . . Bda08g01199 Bda01g01544 Bpe02g01740 Bpe05g00153 . Bma05g00183 Sed13g1555 Cmo01g02043 . . . . . . Cpe02g00060 Bhi09g02069 Tan01g5044 Cmetu04g1063 . . Mch11g0099 . . . . . . . . . . . Cme04g00449
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003873 7 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 44