Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04299 ATGGCTCAAACCACTTCCAATCACACTCAGACAGTCTCCGGTTGGGCAGCCCATGATTCTTCCGGCAAGATCACTCCATATACTTTCAAACGCAGAGAAAACGGCCCTGACGATGTGACCATAGAGATTTTGTACTGTGGAATATGCCATACCGATATTCACTACGCTAAAAATGAGTGGGGCATCACCATGTATCCTGTAGTTCCCGGGCATGAGATGACAGGGGTGATCACGAAGGTAGGAAACAACGTGAAGAAGTTCAAAATAGGAGACAAAGTGGGTGTTGGATGTATAGCCGCTACATGTTTGAACTGTGAATTCTGCAAAGATTCCCAAGAGAATTACTGTGAAAATTTACAGTTTTCGTACAACGGAATCTTCTGGGATGGCAGCATAACATACGGGGGATACTCCAAAATGTTTGTTTCAGATCAAAGGTACGTTGTGCACATACCGGAGAGCCTACCAATGGACGCAGCGGCGCCGTTGCTATGTGCGGGAATAACCGTGTTTACCCCGATGAAAGACCTCGGTTTGATTGATTCACCAGGGAAGAAAGTGGGAGTGGTGGGGCTTGGAGGGCTAGGCCATATAGCAGTAAAATTTGCAAAGGCGTTTGGTCACCATGTGACAGTGATCAGTACCTCTGCTTCAAAGGAACAAGAAGCCAAAAAACGACTTGGGGCTGACGAGTTCATAGTCAGTAAAGATTCTCAACAAATGCAGAGTAATAAGAGGACGCTTGATTTTATAATGGACACAGTATCAGCACAGCATTGCATAGGACCAATATTGGAGCTGCTAAAAGTGAATGGGACATTGTCAATTGTGGGAGCTCCAGAAAAGCCCATTCAATTGCCTTCTTTTCCTTTAATATTTGGGAAGAGGACAGTGAAGGGAAGCATAATTGGTGGAATACAAGAGACACAACAGATGATGGATCTGTGTGGTAAATACAACATTACATGTGATATCGAAGTGGTTAAGCCACACGAAATCAACCATGCAATGGAACGCCTTATCCAAAACGATGTTCGATACCGATTTGTCATTGACATTGCCCAAAACAAACCCAATTCCAACGTTTAA 1089 44.17 MAQTTSNHTQTVSGWAAHDSSGKITPYTFKRRENGPDDVTIEILYCGICHTDIHYAKNEWGITMYPVVPGHEMTGVITKVGNNVKKFKIGDKVGVGCIAATCLNCEFCKDSQENYCENLQFSYNGIFWDGSITYGGYSKMFVSDQRYVVHIPESLPMDAAAPLLCAGITVFTPMKDLGLIDSPGKKVGVVGLGGLGHIAVKFAKAFGHHVTVISTSASKEQEAKKRLGADEFIVSKDSQQMQSNKRTLDFIMDTVSAQHCIGPILELLKVNGTLSIVGAPEKPIQLPSFPLIFGKRTVKGSIIGGIQETQQMMDLCGKYNITCDIEVVKPHEINHAMERLIQNDVRYRFVIDIAQNKPNSNV* 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37636221 37639388 + CsaV3_3G046050.1 Csa03g04299 525204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04299 362 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 321 IPR036291 -
Csa03g04299 362 SMART PKS_ER_names_mod 19 351 IPR020843 GO:0016491
Csa03g04299 362 Pfam Zinc-binding dehydrogenase 194 315 IPR013149 -
Csa03g04299 362 Gene3D - 166 323 - -
Csa03g04299 362 SUPERFAMILY GroES-like 17 180 IPR011032 -
Csa03g04299 362 PANTHER ALDEHYDE REDUCTASE 2 356 - -
Csa03g04299 362 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 6-RELATED 2 356 - -
Csa03g04299 362 CDD CAD1 14 352 - -
Csa03g04299 362 Gene3D - 15 353 - -
Csa03g04299 362 Pfam Alcohol dehydrogenase GroES-like domain 36 150 IPR013154 -
Csa03g04299 362 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04299 Csa-Chr3:37636221 Csa06g03097 Csa-Chr6:26534763 2.08E-147 dispersed
Csa03g04299 Csa-Chr3:37636221 Csa03g01819 Csa-Chr3:13943841 2.84E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04299 K00083 - csv:101213170 731.095