Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04310 ATGGCTATGGACGATACTGAAAGCTGTAGTAGTAGACCGGTGGATGACTTCTCAGTTCAGACTTGGAGACAGAAGCAGAAGGTTGGTGTTTACGACGAAGTTCTTCGTCGACTCAGGCTGTCTCACGAAGCGGAGACCAGCCTTCCTGGTTTTGAGGATGAACTCTGGGCTCATTTTCATCGACTTCCTACTAGGTATGCTATGGACGTCAATGTAGAGAGGGCTGAAGATGTTCTCATGCACAAAAATCTTCTCTATATGGCACATGATCCTGCTACTCGACCTGCAATTGACGTCCGTCTCGTACAGGTTCATTCATCTCCTGGCAGGAACTTTGGCAAGTCAGTTAATTGGAGCTTGAAGGAAAAAGTGGACCAGGAGCGGTTTTCTGGTTATGACAGCAATCAGAGACACCACCCCCCACCAGCATTTGGTTCATCAACACGGGTCGAATATGGTTCTGAGACCAGCCAATTACATGATATAGACCAACCGGGGACTTTCTCCTGGCCAATGCATGAAATTACAATATCAACAATTGACAAGCCGAAATTGCTCAGTCAGTTGACGTCCTTACTTTCTGAGATTGGGCTGAATATTCAAGAAGCACATGCTTTTTCAACAACAGATGGCTTTTCCTTGGATGTTTTTGTAGTTGATGGTTGGGTAATTGAGGATACCAAGCAGCTAAAAGATATACTGGCAGAAGAAATATCAAAGATTCAGCAAGACAAATTTGGAGTCAAGTTCACTACAAAGTATGTCAACATTCCAAGAGACGAAGTTGATGCATGGGAAATTGATGTGAGCCTGCTAGTATTTGAGAAGAAAATTGCGTCTGGATCTCTTAGTGACTTGTATAAAGGCACCTTCTATGGTCAAGATGTTGCTATTAAGCTTTTAAAAAATGAAAACTTGAATGAGACTGTCCGGCGGGAATTTGTTCAAGAAATTCATATCATGAGAAAACTTCGGCACAAGAATGTTGTCCAATTTATTGGTGCATCTACCAGGCCTCCAAGCCTTTTCATTGTTACAGAGTACATGTCTGGTGGAAGCTTACACGACTTTTTACATCAACAAAAGGGCGTTCTTAGTTTTCCTTCCTTACTAAGAGTGGCAGTTGATGTGTCGAAGGGAATGGACTATTTGCATCAAAAGAATATCATCCATAGAGATCTAAAAGCTGCAAATCTTTTGATGGATGAATATGGGGTTATCAAGGTAGCTGATTTTGGTGTTGCTAGAGTGCTAGCTCAATCTGGTGTGATGACTGCTGAAACTGGAACATATCGTTGGATGGCTCCGGAGGTTATTGAGCACAAACCGTACGATCATAAAGCTGATGTTTATAGCTTTGGGATAGTGTTGTGGGAGCTGCTTACAGGACAGCTGCCTTATAATAACTTGACTCCGTTACAAGCAGCAATAGGAGTAGTCCAGAAGGGTCTGAGGCCTAAGATTCCGAGGCATGCTCATCCGATGATCGTGGATTTGCTCGAGAAATGCTGGCTGCAGGATCCATCTTTGAGACCCGAATTCTCTGAAATTACGAGACTTCTACAACAAACACCACCAAAGGAGGAACCTTCTGGAAGATGA 1602 43.2 MAMDDTESCSSRPVDDFSVQTWRQKQKVGVYDEVLRRLRLSHEAETSLPGFEDELWAHFHRLPTRYAMDVNVERAEDVLMHKNLLYMAHDPATRPAIDVRLVQVHSSPGRNFGKSVNWSLKEKVDQERFSGYDSNQRHHPPPAFGSSTRVEYGSETSQLHDIDQPGTFSWPMHEITISTIDKPKLLSQLTSLLSEIGLNIQEAHAFSTTDGFSLDVFVVDGWVIEDTKQLKDILAEEISKIQQDKFGVKFTTKYVNIPRDEVDAWEIDVSLLVFEKKIASGSLSDLYKGTFYGQDVAIKLLKNENLNETVRREFVQEIHIMRKLRHKNVVQFIGASTRPPSLFIVTEYMSGGSLHDFLHQQKGVLSFPSLLRVAVDVSKGMDYLHQKNIIHRDLKAANLLMDEYGVIKVADFGVARVLAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVYSFGIVLWELLTGQLPYNNLTPLQAAIGVVQKGLRPKIPRHAHPMIVDLLEKCWLQDPSLRPEFSEITRLLQQTPPKEEPSGR* 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37721055 37727899 + CsaV3_3G046160.1 Csa03g04310 525215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04310 533 Pfam Protein tyrosine and serine/threonine kinase 273 520 IPR001245 GO:0004672|GO:0006468
Csa03g04310 533 SMART serkin_6 272 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04310 533 SUPERFAMILY Protein kinase-like (PK-like) 252 520 IPR011009 -
Csa03g04310 533 PRINTS Tyrosine kinase catalytic domain signature 383 401 IPR001245 GO:0004672|GO:0006468
Csa03g04310 533 PRINTS Tyrosine kinase catalytic domain signature 492 514 IPR001245 GO:0004672|GO:0006468
Csa03g04310 533 PRINTS Tyrosine kinase catalytic domain signature 429 439 IPR001245 GO:0004672|GO:0006468
Csa03g04310 533 PRINTS Tyrosine kinase catalytic domain signature 448 470 IPR001245 GO:0004672|GO:0006468
Csa03g04310 533 PRINTS Tyrosine kinase catalytic domain signature 346 359 IPR001245 GO:0004672|GO:0006468
Csa03g04310 533 Gene3D Transferase(Phosphotransferase) domain 1 351 531 - -
Csa03g04310 533 Gene3D - 172 243 - -
Csa03g04310 533 Coils Coil 224 244 - -
Csa03g04310 533 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 12 523 - -
Csa03g04310 533 MobiDBLite consensus disorder prediction 129 149 - -
Csa03g04310 533 Gene3D Phosphorylase Kinase; domain 1 265 350 - -
Csa03g04310 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 389 401 IPR008271 GO:0004672|GO:0006468
Csa03g04310 533 ProSiteProfiles ACT domain profile. 174 253 IPR002912 -
Csa03g04310 533 SUPERFAMILY ACT-like 172 241 IPR045865 -
Csa03g04310 533 CDD STKc_MAP3K-like 278 521 - -
Csa03g04310 533 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE 12 523 - -
Csa03g04310 533 ProSiteProfiles Protein kinase domain profile. 272 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01755 Csa-Chr1:14252619 Csa03g04310 Csa-Chr3:37721055 4.74E-46 dispersed
Csa03g00844 Csa-Chr3:7158327 Csa03g04310 Csa-Chr3:37721055 1.67E-27 dispersed
Csa03g01285 Csa-Chr3:9835135 Csa03g04310 Csa-Chr3:37721055 4.52E-22 dispersed
Csa03g02366 Csa-Chr3:21455712 Csa03g04310 Csa-Chr3:37721055 1.78E-28 dispersed
Csa03g04310 Csa-Chr3:37721055 Csa07g00131 Csa-Chr7:1153965 0 dispersed
Csa05g00935 Csa-Chr5:7524197 Csa03g04310 Csa-Chr3:37721055 2.83E-52 dispersed
Csa05g01524 Csa-Chr5:17790698 Csa03g04310 Csa-Chr3:37721055 5.38E-30 dispersed
Csa03g04310 Csa-Chr3:37721055 Csa01g00844 Csa-Chr1:5290383 4.33E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78089 PF07714 PK_Tyr_Ser-Thr 2.20E-72 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04310 - - cpep:111789352 917.916