Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04320 ATGAATGGATGGGCTTTATTTTTGGTGCAGGTTGATAGCTTGAACAAACAAGGTCTCCTCCTTGAAGTGGTTCAAATTTTAACAGATTTGAACCTTTCAATCTCAAAAAGCTACATTTCTTGTGATGCAGGCTGGTTCATGGACGTTTTTCATGTAAAAGATGAGAATAGCCATAAACTTACCGACCAGAAAGTCATCAACTCTATCCAACAGGCCATTGGAACAACCAAAGGACCTGATAACTCGGCCAAAACCAGACGTTATGTTAACAAACTTCTCAATTCTGATAACTCCGGCGAACATACGGCAATTGAAATGACCGGTACCGACCGGCCTGGTCTCTTCTCTGAGATATCTGCTGCATTGGCTGACCTCCATTGCAACGTTGTGGAAGCTCATGCTTGGAGCCATAATGCTCGTTTGGCCTGCATTGCTTACATTTCGGACCAATCTACAGATAGTCCTATTGAGGACCCCCACCGGCTCGCCAACATTGAGGAGCATCTTTCCACTGTTCTCAGGGCAGCGACTGCCCCTCCAATTGCCAGTTGGACGCATACCCTGCAACAAGAAGTGAAGATATCAGCCACAATAACAACCAATGTGGAGCGGCGGCTACACCAACTCTTGGTCTCGGTTAAGGATTATGATTGGACCTCTGAATCCATTTCGAGGAGACCTAAAAGAAAAGAAGAGTGGAGGAAGACAACGGTGAGCATTGAAAGCTGTGATCAGAAAGGATACTCAATTGTCAGCATCGAGTGCAAGGATCGGCCGAGGCTTATGTTTGACACAGTTTGTACTCTTACTGATATGCAATATGTAATCTTTCATGCTTCCATTAGCTCCAAGAAAGATAATGCTTTTCAGGAGTACTTTATCAGACATGTGAATGGGTACGCCTTGAATTCAGATTATGACAAGCATAGGGTGGTAAAATGCTTAGAGGCAGCCATTGAACGTCGTGTTTGTGAGGGAGTGAGGCTGGAGTTATGTGCAAACAACAGGGTGGGATTGCTATCAGATATAACAAGGGTTCTGCGGGAAAATGGGCTGAATGTGGTGAGAGCAGACATAGCAACACAAGGAGAGAAGGCCATTAATGCATTTTATGTCAAAGACATTTCAGGCAAAGAGGTAGATATGGAGATGGTAGAGTCGGTGAAGAAAGAAATTGGCCCTGTTGTACTTCGAGTCAAGAATGAGACAAGCCCTCCATCGACGCCTCAAATTACCAGGTCTCGTTTCTCCTTCAGCGACATGCTCAAGTCTCAGCTCGAGCGCCTCTCTCACAACTTCATTGCTATCAGGCATTGA 1317 45.1 MNGWALFLVQVDSLNKQGLLLEVVQILTDLNLSISKSYISCDAGWFMDVFHVKDENSHKLTDQKVINSIQQAIGTTKGPDNSAKTRRYVNKLLNSDNSGEHTAIEMTGTDRPGLFSEISAALADLHCNVVEAHAWSHNARLACIAYISDQSTDSPIEDPHRLANIEEHLSTVLRAATAPPIASWTHTLQQEVKISATITTNVERRLHQLLVSVKDYDWTSESISRRPKRKEEWRKTTVSIESCDQKGYSIVSIECKDRPRLMFDTVCTLTDMQYVIFHASISSKKDNAFQEYFIRHVNGYALNSDYDKHRVVKCLEAAIERRVCEGVRLELCANNRVGLLSDITRVLRENGLNVVRADIATQGEKAINAFYVKDISGKEVDMEMVESVKKEIGPVVLRVKNETSPPSTPQITRSRFSFSDMLKSQLERLSHNFIAIRH* 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37783214 37785696 - CsaV3_3G046260.1 Csa03g04320 525225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04320 438 Pfam ACT domain 328 374 IPR002912 -
Csa03g04320 438 Pfam ACT domain 103 170 IPR002912 -
Csa03g04320 438 Gene3D - 99 177 - -
Csa03g04320 438 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR2 8 435 - -
Csa03g04320 438 CDD ACT_ACR_2 102 175 - -
Csa03g04320 438 ProSiteProfiles ACT domain profile. 328 406 IPR002912 -
Csa03g04320 438 CDD ACT_ACR_4 326 397 - -
Csa03g04320 438 SUPERFAMILY ACT-like 7 71 IPR045865 -
Csa03g04320 438 ProSiteProfiles ACT domain profile. 8 90 IPR002912 -
Csa03g04320 438 ProSiteProfiles ACT domain profile. 103 183 IPR002912 -
Csa03g04320 438 SUPERFAMILY ACT-like 99 173 IPR045865 -
Csa03g04320 438 CDD ACT_ACR_3 248 322 - -
Csa03g04320 438 Gene3D - 327 402 - -
Csa03g04320 438 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 8 435 IPR040217 -
Csa03g04320 438 SUPERFAMILY ACT-like 326 395 IPR045865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04320 - - - csv:101219701 854.744
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04320 Csa-Chr3:37783214 Csa06g00800 Csa-Chr6:6435164 5.47E-135 dispersed
Csa03g04320 Csa-Chr3:37783214 Csa03g00331 Csa-Chr3:2758610 3.60E-119 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g502 . Blo12g01071 . Bda03g00076 . . Bma04g00073 . . . Cma01g01514 . . . . . . . . . . . . . Cla05g01724 Cam05g1837 Cec05g1851 Cco05g1908 Clacu05g1824 Cmu05g1708 Cre05g1839 Cone4ag1777 . . . Lsi04g02116 Csa03g04320 Chy04g00380 . . . . . . Bpe04g00062 . . Sed13g2012 Cmo01g01567 . . . . . . Cpe02g00442 Bhi09g02223 Tan01g3625 Cmetu04g2629 . Hepe01g2008 Mch11g0544 . . . . . . . . . . . Cme04g00426
Vvi18g1176 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0807 Cone20ag0412 . Csa03g04320 Chy04g00380 . Blo17g00230 . . Bda13g01544 . Bpe14g00321 . Bma02g00288 . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011487 0 2 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31