Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04338 ATGGTTTATTCAAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCATCCATTGCTGAAGAGAAGGGTGTGGCTAGGGACATTCGACACGGCGGAGGATGCAGCACGAGCGTACGATCAAGCAGCCATTTTAATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCACTCTGAAGAAGCCAGCCATGGCCATGGTTCTTCTCCAATGTCTCCAAAAGCACTTTCGGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCTTCCTTGACATGCCTACGACTCGACTGTGACAACGCTCATATCGGTGTATGGCAGAAGCGTGCAGGCACTCGAGCCACTTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAAGAGGTACCTTCGCCTGAATCGACAAGCCAAGAAGCCGATGGCGATGGCGATGGCGATGGTGATGACCACCAAAATGAAATTGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCAACTTCCAGCTAA 585 49.57 MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDCDNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTSQEADGDGDGDGDDHQNEIDEEDRIAMQMIEELLNWNCPLPSTSS* 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37921638 37923626 + CsaV3_3G046440.1 Csa03g04338 525243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04338 194 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Csa03g04338 194 MobiDBLite consensus disorder prediction 153 167 - -
Csa03g04338 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 192 - -
Csa03g04338 194 MobiDBLite consensus disorder prediction 139 173 - -
Csa03g04338 194 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Csa03g04338 194 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Csa03g04338 194 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Csa03g04338 194 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Csa03g04338 194 MobiDBLite consensus disorder prediction 60 84 - -
Csa03g04338 194 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Csa03g04338 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 192 - -
Csa03g04338 194 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Csa03g04338 194 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02012 Csa-Chr1:16960665 Csa03g04338 Csa-Chr3:37921638 7.70E-54 dispersed
Csa03g04338 Csa-Chr3:37921638 Csa04g00152 Csa-Chr4:856671 7.09E-60 dispersed
Csa02g00191 Csa-Chr2:1316777 Csa03g04338 Csa-Chr3:37921638 2.71E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31423 PF00847 AP2 4.00E-13 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04338 - - csv:101206916 382.104