Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04340 ATGAAGTTTTGGAAAATACTGTGTAATTTGATTGAATCAACATTGCCAGAATGGAGAGATGAATACATATCATATAAGGAATTGAAGAAGCAATTGAAAAAGATGTATCCAAAGGAAAACGATGGAACAAACCCTAATAAGCGCTTAAAGTTAGATGGAGAAGCAGAAGCTAATTCAATGGAAATCTTTTTGAATCTGCTTCAGGAAGAATTGGATAAGTTTAACCAATTCTTTGAAACCAAGGAAGAGTTTTATGTTATCAAGTGGAGGTTATTGCAGGATAAGGTTGCGAATGTGGGAGATTCAAACGAGATGCTGATGAAAGTAGGGAGAGACATTGTGGACTTCCATGGAGAAATGGTTTTGTTAGAGAACTATAGTGCTTTGAACTATACAGGATTGGTCAAGATTCTAAAGAAGTACGACAAGCGGAGTGGCGAGTTGATCCGTGTGCCATTCATCAAGAAGGTGTTGCGCCAACCGTTCTACTCAACCGAAGTGCTCGAGAAGCTATTGAAGGAATGTGAGGTTATGCTTGATCTTCTCTTCTTTAAGAAAGACATGTCAACTGCTGCTGCTGCTACTGCTATCAATGAGGAAGAAAGGGGCTGCTCGGAGGCGAAAACGAGTGCGACGACTAACGGTAAAGAAAAGGTGTTGAACATTCCCGAAGATCTTGCGGAGATCGAGTACATGGAGAGTATGTACATGAAGCTAACGTTATCAGCATTGAATGTTCTGAATGAGATTAGGGGTGGAAGTTCAACAATTGATGTGTTCTCATGGCTTTGA 792 40.15 MKFWKILCNLIESTLPEWRDEYISYKELKKQLKKMYPKENDGTNPNKRLKLDGEAEANSMEIFLNLLQEELDKFNQFFETKEEFYVIKWRLLQDKVANVGDSNEMLMKVGRDIVDFHGEMVLLENYSALNYTGLVKILKKYDKRSGELIRVPFIKKVLRQPFYSTEVLEKLLKECEVMLDLLFFKKDMSTAAAATAINEEERGCSEAKTSATTNGKEKVLNIPEDLAEIEYMESMYMKLTLSALNVLNEIRGGSSTIDVFSWL* 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37933215 37937774 + CsaV3_3G046460.1 Csa03g04340 525245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04340 263 Pfam SPX domain 112 157 IPR004331 -
Csa03g04340 263 Pfam SPX domain 1 50 IPR004331 -
Csa03g04340 263 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 1 262 IPR031142 GO:0016036
Csa03g04340 263 PANTHER SPX DOMAIN-CONTAINING PROTEIN 1 1 262 - -
Csa03g04340 263 ProSiteProfiles SPX domain profile. 1 155 IPR004331 -
Csa03g04340 263 CDD SPX_AtSPX1_like 2 144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04340 - - - bhj:120086831 418.313
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02011 Csa-Chr1:16941555 Csa03g04340 Csa-Chr3:37933215 1.62E-101 dispersed
Csa03g04340 Csa-Chr3:37933215 Csa06g00900 Csa-Chr6:7249890 4.04E-48 dispersed
Csa02g00190 Csa-Chr2:1309249 Csa03g04340 Csa-Chr3:37933215 9.46E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g476 Blo01g01384 . Bda01g00742 . . Bpe02g00565 . . . . Cma01g01500 . . . . . . . . . . . . . Cla05g01742 Cam05g1855 Cec05g1867 Cco05g1930 Clacu05g1846 Cmu05g1727 Cre05g1859 . . . . Lsi04g02134 Csa03g04340 Chy04g00362 . . . . . . . . . Sed13g2028 Cmo01g01556 . . . . . . Cpe02g00455 Bhi09g02250 Tan01g3654 Cmetu04g0930 . Hepe01g2027 Mch11g0561 . . . . . . . . . . . Cme04g00404
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014025 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 24