Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04343 ATGATGAAAAGAGGACTTTCAACTTCATCAATTTCTTCCCTACTGTCGCTGAGGTTCACTCGTCAACAATCTTCATCTTCAAAGTTCGGCGTTAATCCACTTCCTCTTCGATTCCTATCTTCATTTACGAAGCCTCCAGGGCTATTAGATAAGTACAGGGTTCTAGTTGAGCGAGGGGAGCTACAACATGATCCTTTTCAAGAGAGAGTGGCTTCCGAATTGGAGAGTTTGCTTGGAAGGTTGGAGCAATATGAAAAGGATATGGAAGAGTATCATGTAAAACTAGCTGAGTGGAAGCAGAATAGGGAGAAGGAGAGGCGCAGACTTTTAATGGAGGAAGCTGAATCTAAACAACAGGGTGATGCAGTAAACAGGCGTCGAAGCAAACTTCTTGAAACATTGATGTTTCGGAAAAAGTCTGAAAATATTGAACCCGGAGTTGGAAAATGGGTTTCATACCTTAACCGGGAGAAGAAGTTGGATTCACTTGTAGGTCGCTGTCCTTCTGCTCCACATGCTCCTAGAGGACTGTACATATATGGCAATGTTGGAAGTGGGAAGACAATGCTCATGGACATGTTTTTCAATGCTACTGAAGGAATTGTTAAACATAGACAAAGGTACCATTTCCATGAGGCTATGCTTAAAATTAACGAAGATATGCACAAGATATGGAAAAATCAAGTGAGGGAGAAATCTTCACAATCAAGCATTTCGAGTTGGATTATGAATCTTCCATTTGATACAAAAGTTAAGGAGTGGTTGGCTGGAGAAGAAAAATACAAGCAAGAGGTACAGATGAAAAACATTCTTCCTGCCGTTGCTGATAAATTTCTTGTTGATCAGCAAGCGGGCCATGTAGGAGCTAGCATTCTTTGCTTCGATGAGATACAGACAGTTGATGTATTTGCTATTGTGGCCTTGTCTGGAATTATAAGCAGATTGTTGAGTACTGGAACAGTTCTTGTAGCCACAAGCAATCGAGCTCCAAATGACTTGAATCAGGATGGGATGCAGAAGGATATCTTTCAAAAGTTTGTTATCAAACTGGAGGAGCATTGTGAATTTGTTCTTATTGGCAGTGAGATTGACTACCGGCGCTTTATAGCCCAAAGGTCTTTTGACCAGGTGCACTATTTCTGGCCTTTAGATTGCACATCAATGAGGAAATTTGAAAATATGTGGGTAGAAATCACCAGCCAATTGGAAGGACAAATCACCTCTGAAACTATTCGTGTGATGTTTGGAAGAAAATTGGAGGTGCCAGAAAGCTGCAATGGAGTGGCACGATTTGCATTTGATTTTCTCTGCGGTCAACCGGTAGGTGCTGCAGACTATATTGCCTTGGCCAAAAACTACCACACTGTCTTCATATCCAACATTCCAATAATGAGTATGCGCATCCGTGACAAGGCTCGGCGGTTCATCACTCTCATCGATGAGCTATACAATCACCATTGCTGCCTATTTTGCTTGGCAGCTACGTCAATTGAGGACTTATTTCAAGGGACTGAAGAGGGTGCGCTTTTTGATTTGGAGAGTTTTCAGTTTGAAACAGAGGCAGAAGGGGGAAAGCTTCGTCGAAACGTCCTAGTGGAAGGAAATGTTGGATCAGTGGGTGCTCCAACTGCAATTGTGTCAATGCTATCTGGTCAAGAAGAGATGTTTGCATTCCGTCGAGCTGTTTCTCGATTGATTGAGATGCAGACACCCTTATACTTGGAGGGAGTGCGAAACGTTCATCCATATTTCCAAAGACGAGAACAAGAATCATCAGTTGATCCTCCAGCCCCCAGGTTTGAGTTCCATCAATTAACTTGA 1821 42.45 MMKRGLSTSSISSLLSLRFTRQQSSSSKFGVNPLPLRFLSSFTKPPGLLDKYRVLVERGELQHDPFQERVASELESLLGRLEQYEKDMEEYHVKLAEWKQNREKERRRLLMEEAESKQQGDAVNRRRSKLLETLMFRKKSENIEPGVGKWVSYLNREKKLDSLVGRCPSAPHAPRGLYIYGNVGSGKTMLMDMFFNATEGIVKHRQRYHFHEAMLKINEDMHKIWKNQVREKSSQSSISSWIMNLPFDTKVKEWLAGEEKYKQEVQMKNILPAVADKFLVDQQAGHVGASILCFDEIQTVDVFAIVALSGIISRLLSTGTVLVATSNRAPNDLNQDGMQKDIFQKFVIKLEEHCEFVLIGSEIDYRRFIAQRSFDQVHYFWPLDCTSMRKFENMWVEITSQLEGQITSETIRVMFGRKLEVPESCNGVARFAFDFLCGQPVGAADYIALAKNYHTVFISNIPIMSMRIRDKARRFITLIDELYNHHCCLFCLAATSIEDLFQGTEEGALFDLESFQFETEAEGGKLRRNVLVEGNVGSVGAPTAIVSMLSGQEEMFAFRRAVSRLIEMQTPLYLEGVRNVHPYFQRREQESSVDPPAPRFEFHQLT* 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37950613 37959619 + CsaV3_3G046490.1 Csa03g04343 525248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04343 606 Pfam AFG1-like ATPase 161 505 IPR005654 GO:0005524|GO:0016887
Csa03g04343 606 Gene3D - 158 367 IPR027417 -
Csa03g04343 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 347 IPR027417 -
Csa03g04343 606 PANTHER AFG1-LIKE ATPASE FAMILY PROTEIN 40 592 - -
Csa03g04343 606 Coils Coil 67 115 - -
Csa03g04343 606 PANTHER ATPASE N2B 40 592 IPR005654 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04343 - - - csv:101218518 1194.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01920 Csa-Chr1:16088021 Csa03g04343 Csa-Chr3:37950613 2.17E-49 dispersed
Csa03g04343 Csa-Chr3:37950613 Csa05g01207 Csa-Chr5:12564427 6.55E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g464 . Blo12g01080 . Bda03g00067 . . Bma04g00064 . . . . . Car09g00408 . . . . . . . . . . . Cla05g01746 Cam05g1859 Cec05g1871 Cco05g1934 Clacu05g1850 Cmu05g1731 Cre05g1863 . . . . Lsi04g02139 Csa03g04343 Chy04g00359 . . . . . . Bpe04g00052 . . Sed05g1692 . Cmo09g00473 Cma09g00466 . . . . . Bhi09g02257 Tan01g3659 Cmetu04g0660 . . . . . . . . . . . . . . Cme04g00401
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008383 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 3 2 1 35