Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04345 ATGGAAGCAAATGCGGGATTGGTGGCTGGATCTTACAAGAGGAATGAGCTTGTTCGGATTCGCCACGATTCCGACAGTGGGCCTAAACCACTGAAGAATTTAAACAGCCAAACATGTCAAATATGTGGAGACACAGTTGGTCTTACGGCCTCTGGTGATGTCTTTGTTGCTTGCAATGAATGTGCATTTCCCGTTTGTCGTCCTTGCTATGAGTATGAGAGGAAAGATGGGAACCAGTCTTGTCCTCAGTGCAAGACTAGATACAAGAGGCACAAAGGGAGTCCTCGCGTTGATGGTGATGATGACGAGGATGATGTGGATGATATTGAGAATGAGTTTAATTACGTTCAAGGAAGTAGCAAGACTAAACGACAGTGGCATGGGGAAGATGCTGAACTATCTACTTCTGCGAGACACGAGTCTCAACCTATACCACTCCTTACAAATGGCCAATCGGTGTCTGGAGAAATTCCTTGTGCTACCCCTGATAATCAATCAGTGCGAACCACATCTGGTCCTTTGGGTCCTCCAGAAAAGCATATGCAGTCCCATCCATATGTTGACCCACGGCAGCCAGTTCCCGTGAGAATTGTGGATCCATCAAAGGATTTGAATTCTTATGGGCTTGGGAATGTTGACTGGAAGGAAAGAGTGGAAGGTTGGAAACTGAAACAAGAGAAAAACATGATGCAGATGACAAGTAGGTACACTGAAGGGAAGGGGGACATGGAGGGCACTGGGTCAAATGGAGAAGAACTTCAAATGGCTGATGATGCTAGGCAACCTCTGAGCCGTGTCGTTCCTATTCCATCCTCTCACTTGACCCCGTATCGTGTTGTGATCATACTTCGTCTTATTATTCTGGGCTTCTTCTTACAGTACCGTTTGACACACCCTGTGAAAGATGCATACCCCTTGTGGTTAACATCAGTTATTTGTGAGGTTTGGTTTGCCCTTTCCTGGCTTCTGGATCAGTTTCCAAAATGGTCTCCTGTCAATCGCGAGACCTTCCTTGAGAGACTCGCGCTAAGATATGATCGTGAAGGAGAGCCATCACAGTTAGCTCCTGTTGATGTCTTTGTCAGTACAGTGGATCCACTCAAAGAGCCTCCACTTGTCACAGCAAACACTGTGCTTTCCATACTTTCCGTGGACTACCCAGTGGACAAAGTTTCGTGCTATGTATCAGACGATGGTTCAGCAATGCTTACATTTGAAGCGCTCTCTGAAACTGCAGAGTTTGCAAGGAAGTGGGTTCCCTTTTGCAAGAAGCACAACATTGAGCCAAGGGCCCCTGAATTTTATTTTGCTCAAAAAATAGACTACTTGAAGGACAAGATTAAGCCTTCTTTTGTTAAAGAGCGGCGGGCAATGAAGAGAGAGTACGAAGAATTCAAGGTTCGAATCAATGCACTTGTTGCCAAAGCACAAAAGATGCCTGAGGAAGGATGGACCATGCAGGATGGAACGGCATGGCCTGGAAACAATCCCAGGGATCATCCTGGAATGATACAGGTTTTCTTAGGTCACAGTGGAGGTCTTGATACTGATGGAAATGAACTGCCACGACTTGTTTATGTTTCTCGTGAGAAGCGACCGGGTTTCCAGCACCACAAGAAAGCCGGAGCTATGAATGCATTGATCCGAGTTTCTGCCGTGCTTACAAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTCAACAACAGCAAAGCTCTCAAGGAAGCCATGTGTTTCATGATGGACCCTGCATATGGGAAGAAAACATGTTATGTACAATTCCCACAACGTTTTGATGGCATTGATTTGCACGATCGATATGCCAATCGCAACATAGTCTTTTTCGACATAAACTTGAAGGGTTTGGATGGCCTCCAGGGTCCAGTCTATGTGGGAACTGGTTGTTGTTTCAATCGGCAAGCTCTATATGGTTATGATCCTGTACTGACCGAGGCAGATTTGGAACCAAATATTATCATTAAGAGTTGCTGTGGTTCAAGAAAGAAGGGAAGGAACAAGAAGTACATTGACAAAAAGAGGGCTGCAAAGAGGACTGAGTCTACCATTCCCATCTTTAATATGGAAGATATCGAGGAAGGTGTTGAAGGATATGATGATGAGAGGTCACTCCTGATGTCTCAGAAGAGTTTAGAGAAGCGCTTTGGCCAATCTCCAGTTTTTATTGCAGCCACTTTCATGGAAATGGGAGGTATTCCACCTTCAACCAATCCTGCAACTCTTCTAAAGGAAGCAATTCATGTCATCAGTTGTGGATATGAAGATAAGACAGAATGGGGCAAAGAGATTGGGTGGATCTATGGTTCTGTGACAGAAGATATTTTGACTGGGTTTAAGATGCATGCTCGTGGGTGGATATCAATTTACTGCATGCCTCCGCGGCCAGCATTCAAGGGATCTGCTCCCATCAATCTTTCTGATCGTTTAAATCAGGTGCTTCGATGGGCTTTGGGTTCCATTGAAATCTTGCTTAGCAGGCATTGTCCTATCTGGTATGGCTACAATGGAAGGTTAAAGCTTTTGGAGAGAATAGCATACATCAATACCATCGTCTACCCTATCACCTCAATTCCTCTTATTGCTTACTGTATGCTTCCGGCGTTCTGTCTTTTGACTGGAAAGTTTATCATTCCCGAGATAAGCAACTTTGCCAGTATGTGGTTCATTCTCCTTTTCGTTTCCATTTTTGCAACGGGTATTCTTGAACTCAGATGGAGTGGGGTTAGCATTGAAGACTGGTGGAGGAATGAACAATTTTGGGTCATTGGTGGTACTTCAGCTCATCTGTTTGCCGTCTTCCAGGGTCTCTTAAAGGTTCTTGCTGGAATCGATACCAACTTCACTGTCACGTCAAAGGCCAGCGATGAGGATGGGGATTTTGCAGAGCTTTATGTGTTCAAATGGACTTCTCTCCTCATCCCTCCCACCACTGTCCTTATTATGAATATGGTCGGTATAGTGGCCGGTGTGTCGTATGCCATTAACAGTGGTTACCAATCTTGGGGTCCTCTTTTTGGTAAGCTGTTCTTTGCATTGTGGGTTATTGTCCATTTATATCCTTTCCTAAAGGGTTTACTGGGAAGGCAAAATCGTACACCAACCATCGTCATTGTCTGGTCCATTCTCCTTGCTTCCATTTTCTCCTTGCTTTGGGTGCGAATCGATCCATTTACCTCGGCCTCGACGAAGGCTGCCAATGGTCAATGTGGTATCAATTGCTAG 3246 44.95 MEANAGLVAGSYKRNELVRIRHDSDSGPKPLKNLNSQTCQICGDTVGLTASGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYVQGSSKTKRQWHGEDAELSTSARHESQPIPLLTNGQSVSGEIPCATPDNQSVRTTSGPLGPPEKHMQSHPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQMTSRYTEGKGDMEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRLTHPVKDAYPLWLTSVICEVWFALSWLLDQFPKWSPVNRETFLERLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIKPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTAWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIIKSCCGSRKKGRNKKYIDKKRAAKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEMGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLIAYCMLPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLIMNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSASTKAANGQCGINC* 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37966161 37972112 - CsaV3_3G046510.1 Csa03g04345 525250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04345 1081 MobiDBLite consensus disorder prediction 118 140 - -
Csa03g04345 1081 Coils Coil 455 475 - -
Csa03g04345 1081 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Csa03g04345 1081 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Csa03g04345 1081 SUPERFAMILY RING/U-box 22 111 - -
Csa03g04345 1081 MobiDBLite consensus disorder prediction 162 192 - -
Csa03g04345 1081 MobiDBLite consensus disorder prediction 75 106 - -
Csa03g04345 1081 SUPERFAMILY Nucleotide-diphospho-sugar transferases 375 648 IPR029044 -
Csa03g04345 1081 Pfam Zinc-binding RING-finger 29 106 IPR027934 -
Csa03g04345 1081 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Csa03g04345 1081 PANTHER CELLULOSE SYNTHASE 19 1081 - -
Csa03g04345 1081 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 515 652 IPR029044 -
Csa03g04345 1081 Pfam Cellulose synthase 357 1072 IPR005150 GO:0016020|GO:0016760|GO:0030244
Csa03g04345 1081 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 19 1081 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04345 Csa-Chr3:37966161 Csa04g01082 Csa-Chr4:8832210 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04345 K10999 - csv:101205724 2215.27