Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04352 ATGCTTCGTCTATGGCGTCTTCGAAGAGTCAGTTCCATGTTCGCCAGGTTAGAAAAGGACAAGAACTTCAACTATTTCATGGTTCGATGTGCTAAGCTTATATTTGTGTGCCTGTTCACGGCTCATTTTGCCGCGTGCTGCTTCTATCTAATAGCTGCAAACTATCCAGACCCAAAAGAGACATGGATAGCCTTGTCCATAGATGACTTTTATACAGCAAGTTTGGGGAGACGTTATGTTACGGCCATTTATTGGTCAATTACCACAATCACAACCATTGGCTATGGCGATTTGCATCCCGTAAATGAACAAGAAATTACTTTTACCGTCTTTTACCTCTTCTTTATTCTCGGCTTGCAAGCTTATCTCATCGGAAATATGACTAACTTGATCGTCCATGGCACAAGTCGAACCAGGAAATTTAGGGACACCATCCAAGCATCCTCGAATTTTGCCCATAGAAATCAGCTACCTGTTCGACTTCAAGAACAGATGCTTGCTCATCTGTGTTTGAAATTCAGAACTGATTTAGAGGGATTACAACAACAAGAGACAGTTGATGCTCTTCCAAAAGCCATCAGATCTAGCATTGCCCTCCATCTCTTCTATTCACTTGTTGATAGAACTTATTTGTTTAATGGAGTATCAACAGACTTGATCTTTCAACTGGTAACTGAAATGAAGGCAGAGTACTTCCCTCCCAAAGAAGATATCATCCTGCAGAATGAAGCACCAACAGATTTCTATATCATTGTCACTGGCGCTGTGGATCTTATTACACAAAGACGTGGAATGGAAGAGATCGTGGGTGAAGCAAAAAAAGGAGATGTCGTCGGTGAGATAGGTGTGCTTAGTTATAAACCGCAATTGTTTACAGTCCGAACAAGCCGTTTGAGTCAATTGTTGCGTTTGAATCGCACCACGTTTTTTAACTTGGTACAAGCAAGCGTTGGGGATGGGGCAATAATAATGAACAATCTTCTTAAGCACCTGAAGGAGATAAAAGACCCCATGATGGAGGAAATTTTGCAAGAAGCAGAACAGACATTGTCTAGGGCCAAAATAGAAATGCCTCTCAATTTATACCATGCTGCCGACAGTGGTGATGATTTATTGTTGCATCAATTGCTAAAGCGGGGTTTGAATCCAAATGAAGTAGATACCAGAGACGGGAAGACTGCACTTCATATTGCAGCAGCCAAAGGAAAAGAACACTGCTTAGCTCTACTCCTAGAGTATGGAGCAGACCCGAACCAAAGAGACTTTGAAGGAAACGTACCCGTCTGGCAAGCAATACAAGGGAAGCATGAGTCCATAGTCAAGGTTCTAATGGACAACGGTGCCAATATTTCTTCAGGCGACGTTGCTCAGTTTGCTTGCACTGCTGCAGAGAAAAACAGTCTAGATATGCTCAAATCCATCATCCATTGTGGTGGAGACATAACGCTACCAAGAAGCAATGGGACAACAGCTCTTCACATGGCAGTATGTGAAGGAAATAGTGAAACCGTAAAGTTCCTTTTAGATCACGGGGCTGACATTGATAAGCCAGATGTTAATGGATGGACTCCTCGAGGATTGGCAGATCATCAAGGCCATGAAAAGATAAAAGAACTATTCTCTGTCAAGCAAGCTGGTCAAACATCAGCTGCTGTCCGTATTCCCCAAAATCCTGAATCGAAATACGTACAGAAGTTCCCGAGCGAATCAAGCATGCCACCGCGAATTTCTGAAAACTCCTGCCCCACTCCTATTCGAGAATCGTTTTTTTCTGATAGGCCACCAAGAAGGAGGAGCAATAATTTTCAGAACTCACTAGTGGGATTCATGACAACTAACACAGGTGAAAGGGACATTCTACAACGCGCATCACTCAGTTATAGCAATAGCCAAAGCATGAGAATGACTTACCAGCAAAGAGTTACTATCAGTTGCCCTGAAACGGGAGACATTTCTGGAAAGCTAGTGCTTTTACCCAAATCCAACCAAGAACTACGTGAAATAGGTTCCAGAAAATATGGGATTTCTATAGCAAAGGTTTTAACTAAAGAAGGAGCTGAAGTTGAGGATACATACCTTATCAGAGACGGCGATCACCTCGTACTTGTTGGTGATGCAGGTACTAGTCAACAAAAATTGTAG 2142 42.53 MLRLWRLRRVSSMFARLEKDKNFNYFMVRCAKLIFVCLFTAHFAACCFYLIAANYPDPKETWIALSIDDFYTASLGRRYVTAIYWSITTITTIGYGDLHPVNEQEITFTVFYLFFILGLQAYLIGNMTNLIVHGTSRTRKFRDTIQASSNFAHRNQLPVRLQEQMLAHLCLKFRTDLEGLQQQETVDALPKAIRSSIALHLFYSLVDRTYLFNGVSTDLIFQLVTEMKAEYFPPKEDIILQNEAPTDFYIIVTGAVDLITQRRGMEEIVGEAKKGDVVGEIGVLSYKPQLFTVRTSRLSQLLRLNRTTFFNLVQASVGDGAIIMNNLLKHLKEIKDPMMEEILQEAEQTLSRAKIEMPLNLYHAADSGDDLLLHQLLKRGLNPNEVDTRDGKTALHIAAAKGKEHCLALLLEYGADPNQRDFEGNVPVWQAIQGKHESIVKVLMDNGANISSGDVAQFACTAAEKNSLDMLKSIIHCGGDITLPRSNGTTALHMAVCEGNSETVKFLLDHGADIDKPDVNGWTPRGLADHQGHEKIKELFSVKQAGQTSAAVRIPQNPESKYVQKFPSESSMPPRISENSCPTPIRESFFSDRPPRRRSNNFQNSLVGFMTTNTGERDILQRASLSYSNSQSMRMTYQQRVTISCPETGDISGKLVLLPKSNQELREIGSRKYGISIAKVLTKEGAEVEDTYLIRDGDHLVLVGDAGTSQQKL* 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38013152 38021802 + CsaV3_3G046580.1 Csa03g04352 525257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04352 713 ProSiteProfiles Ankyrin repeat profile. 390 422 IPR002110 GO:0005515
Csa03g04352 713 Gene3D - 1 132 - -
Csa03g04352 713 SUPERFAMILY Voltage-gated potassium channels 2 168 - -
Csa03g04352 713 Pfam Cyclic nucleotide-binding domain 231 315 IPR000595 -
Csa03g04352 713 Gene3D Jelly Rolls 178 354 IPR014710 -
Csa03g04352 713 ProSiteProfiles Ankyrin repeat region circular profile. 487 518 - -
Csa03g04352 713 Pfam Ankyrin repeats (3 copies) 462 540 IPR002110 GO:0005515
Csa03g04352 713 Pfam Ankyrin repeats (3 copies) 361 452 IPR002110 GO:0005515
Csa03g04352 713 CDD CAP_ED 211 324 IPR000595 -
Csa03g04352 713 Pfam Ion transport protein 1 138 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Csa03g04352 713 PANTHER POTASSIUM CHANNEL AKT1-LIKE ISOFORM X1 1 709 - -
Csa03g04352 713 Gene3D - 358 542 IPR036770 -
Csa03g04352 713 ProSiteProfiles Ankyrin repeat region circular profile. 390 421 - -
Csa03g04352 713 MobiDBLite consensus disorder prediction 563 582 - -
Csa03g04352 713 ProSiteProfiles Ankyrin repeat region circular profile. 423 454 - -
Csa03g04352 713 SUPERFAMILY Ankyrin repeat 360 540 IPR036770 -
Csa03g04352 713 Pfam KHA, dimerisation domain of potassium ion channel 640 702 IPR021789 -
Csa03g04352 713 ProSiteProfiles KHA domain profile. 640 713 IPR021789 -
Csa03g04352 713 ProSiteProfiles cAMP/cGMP binding motif profile. 211 313 IPR000595 -
Csa03g04352 713 SUPERFAMILY cAMP-binding domain-like 136 331 IPR018490 -
Csa03g04352 713 ProSiteProfiles Ankyrin repeat profile. 423 455 IPR002110 GO:0005515
Csa03g04352 713 SMART ANK_2a 390 419 IPR002110 GO:0005515
Csa03g04352 713 SMART ANK_2a 423 452 IPR002110 GO:0005515
Csa03g04352 713 SMART ANK_2a 487 516 IPR002110 GO:0005515
Csa03g04352 713 SMART ANK_2a 454 483 IPR002110 GO:0005515
Csa03g04352 713 SMART ANK_2a 356 385 IPR002110 GO:0005515
Csa03g04352 713 PRINTS Ankyrin repeat signature 391 406 IPR002110 GO:0005515
Csa03g04352 713 PRINTS Ankyrin repeat signature 503 517 IPR002110 GO:0005515
Csa03g04352 713 ProSiteProfiles Ankyrin repeat profile. 487 519 IPR002110 GO:0005515
Csa03g04352 713 PANTHER POTASSIUM CHANNEL AKT1 1 709 IPR045319 GO:0005249|GO:0006813
Csa03g04352 713 SMART cnmp_10 211 328 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01957 Csa-Chr1:16418603 Csa03g04352 Csa-Chr3:38013152 0 dispersed
Csa03g04352 Csa-Chr3:38013152 Csa03g04376 Csa-Chr3:38197021 5.09E-114 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04352 K21867 - csv:101217334 1412.51