Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04355 ATGGCGGCATCTCTAAGCTCTTGGTCCCACGCCCTCGTCAGAATTTCCCCTTACACCTTCTCTGCCGTCGGCATTGCCATTTCCATCGGCGTTTCTGTCCTCGGAGCCGCCTGGGGAATCTACATAACCGGAAGTAGTCTGATCGGTGCTGCAATCAAAGCTCCGCGTATTACCTCCAAGAATTTAATTAGTGTAATTTTCTGTGAAGCTGTGGCTATATATGGTGTCATTGTGGCCATCATTTTACAAACAAAACTGGAGAGTGTGCCAGCATCTCAAATTTATACTCCTGAGTCTCTAACAGCAGGATATTCAATCTTTGCATCTGGGATTATTGTCGGCTTTTCTAACTTGTTCTGCGGGTTATGTGTAGGGATTATTGGAAGCAGTTGTGCATTGTCTGATGCCCAAAACTCATCTCTTTTTGTAAAGATTCTTGTGATCGAGATCTTCGGAAGTGCACTCGGATTATTTGGTGTAATTGTAGGAATAATCATGTCTGCTCAAGCTACATGGCCAGCAAAACCAATTTAA 534 44.01 MAASLSSWSHALVRISPYTFSAVGIAISIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPASQIYTPESLTAGYSIFASGIIVGFSNLFCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPAKPI* 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38036988 38038965 - CsaV3_3G046610.1 Csa03g04355 525260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04355 177 SUPERFAMILY F1F0 ATP synthase subunit C 99 167 IPR035921 -
Csa03g04355 177 CDD ATP-synt_Vo_c_ATP6F_rpt2 102 166 - -
Csa03g04355 177 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 5 174 - -
Csa03g04355 177 PRINTS Vacuolar ATP synthase 16kDa subunit signature 36 60 IPR000245 GO:0033179|GO:0046961|GO:1902600
Csa03g04355 177 PRINTS Vacuolar ATP synthase 16kDa subunit signature 62 86 IPR000245 GO:0033179|GO:0046961|GO:1902600
Csa03g04355 177 PRINTS Vacuolar ATP synthase 16kDa subunit signature 118 144 IPR000245 GO:0033179|GO:0046961|GO:1902600
Csa03g04355 177 PRINTS Vacuolar ATP synthase 16kDa subunit signature 145 168 IPR000245 GO:0033179|GO:0046961|GO:1902600
Csa03g04355 177 Gene3D - 18 173 IPR035921 -
Csa03g04355 177 SUPERFAMILY F1F0 ATP synthase subunit C 16 85 IPR035921 -
Csa03g04355 177 CDD ATP-synt_Vo_c_ATP6F_rpt1 20 82 - -
Csa03g04355 177 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 5 174 - -
Csa03g04355 177 Pfam ATP synthase subunit C 107 166 IPR002379 GO:0015078|GO:0033177|GO:1902600
Csa03g04355 177 Pfam ATP synthase subunit C 24 82 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01099 Csa-Chr3:8696334 Csa03g04355 Csa-Chr3:38036988 4.92E-21 dispersed
Csa02g02355 Csa-Chr2:20918573 Csa03g04355 Csa-Chr3:38036988 5.81E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04355 K03661 - csv:101205012 333.183