Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04360 ATGAGTAGGGAAAATGTTAATTTTCAAGTGGAAGAGCGCTCCGGCAGAATCACGAGAGCACGCGCAAAAGAGCTGAGCGAATCAGGAGGCATCTTATGTTCCTCAAAATCTTCTGGAGTTCAGAAGCATATTCTACGAGCTAACTCAAAAAGAATGGCATCTGATGATATTAAAACTTGTTCAGGCTCCTCCCATGGCCTTCCTAACAAAAGAAGAGCAGTGCTCAAGGATGTCACTAACATTTCCACCAAAGGTTTTGATAAGAATTGTAGAAATGTTTCTAATATTCAGGGTGCCAAAACAACAAGAAAAGTTTCTTCAAAAGCTAAGGCAAATGCGCCTTCTAATGCTCCTGAAGAAATTTTAGGTGCAGAAGAAGATGCAAACACAAGACTGGCTGAGGATTTGTCTAAAATAAGGGTGGTAGAATCTCGAGAGGTCTCTCTAAGAGAGACTTTGGACGAAAAAGAGAGAACAGAGCAAACTAGGAGTCTTACCAGCAGAGAATGTGGAGTTTCAGATATGATTCTCTCTGTATCTTCAGAAGAATCTATCCCTCAGCCAAATGAAAAATATATGGCACCTCAACGATCGGCAGCATTAAGGGATAGAGGTGTTATAGACATTGATTCAAACTCTAAATGTCTTCAATCATGCAGCACATATGCTCCAGACATATATGACAGGATACGTGTGACAGAGCTTGATCAAAGGGCCTCAACTACCTACATGGAACAGTTGCAGCAAGATATCACTGCAAACATGCGAGGAATACTGGTTGATTGGCTTGTAGAGGTTTCTGAAGAATATAATCTAGTTTCAGATACACTCTATTTGACTGTTAATGTCATCGATCGATTCCTCTCTCAAAATTATATTGAAAAGAAGCGACTACAACTTGTTGGTGTTGCAAGCATGTTAATTGCATCAAAATATGAAGAGATCTGTGCACCGCGAGTGGAAGATTTCTGCTTCATTACAGATAATACTTACACCAAAGGAGAGGTTGTAGAAATGGAGAGTGAAGTTTTGAACATACTGCACTTTCGGCTATCTGTTCCCACTACTAAGACATTTCTAAGGAGATTTATACAATCAGCTCATGCTTCTTACAAGCTTCCTAAAGTTCCTTCCTTCTCTGATAGCCGCATCCGCCGTATTTCTTGCAAGATGGACACTTGA 1182 40.27 MSRENVNFQVEERSGRITRARAKELSESGGILCSSKSSGVQKHILRANSKRMASDDIKTCSGSSHGLPNKRRAVLKDVTNISTKGFDKNCRNVSNIQGAKTTRKVSSKAKANAPSNAPEEILGAEEDANTRLAEDLSKIRVVESREVSLRETLDEKERTEQTRSLTSRECGVSDMILSVSSEESIPQPNEKYMAPQRSAALRDRGVIDIDSNSKCLQSCSTYAPDIYDRIRVTELDQRASTTYMEQLQQDITANMRGILVDWLVEVSEEYNLVSDTLYLTVNVIDRFLSQNYIEKKRLQLVGVASMLIASKYEEICAPRVEDFCFITDNTYTKGEVVEMESEVLNILHFRLSVPTTKTFLRRFIQSAHASYKLPKVPSFSDSRIRRISCKMDT* 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38061781 38068200 + CsaV3_3G046660.1 Csa03g04360 525265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04360 393 Pfam Cyclin, N-terminal domain 225 352 IPR006671 -
Csa03g04360 393 SUPERFAMILY Cyclin-like 217 351 IPR036915 -
Csa03g04360 393 Gene3D - 239 351 - -
Csa03g04360 393 SMART cyclin_7 261 345 IPR013763 -
Csa03g04360 393 ProSitePatterns Cyclins signature. 256 287 IPR006671 -
Csa03g04360 393 PANTHER CYCLIN-A2-4 49 373 - -
Csa03g04360 393 CDD CYCLIN 255 344 IPR013763 -
Csa03g04360 393 PANTHER CYCLINS 49 373 IPR039361 -
Csa03g04360 393 MobiDBLite consensus disorder prediction 97 123 - -
Csa03g04360 393 MobiDBLite consensus disorder prediction 97 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04360 Csa-Chr3:38061781 Csa07g02205 Csa-Chr7:20738344 3.05E-80 dispersed
Csa02g02345 Csa-Chr2:20822634 Csa03g04360 Csa-Chr3:38061781 9.34E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04360 K06627 - csv:101204275 715.687