Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04376 ATGTCCACGCCAATCTCCGAAACAAGGTCGCCGATGCCTTTGCTGTTCCGGCGGCACTCAAGTGGCGAAATAAAGAATTTGACGTCAGTTTCCAGCAGCCTCTTGCCGGCGTTCGGAACAGTTGTTAACGATGGATACACACACCTGAACAAGTTCGTAATAGTTCCGTATGACAGAAGATATCGGTGGTGGCAAACTTTCCTGGTAGTACTAGTGGTTTACTCAGCGTGGGTATCACCCTTTGAGCTTGCCTTCAAGAAAGTGGCGACTGGGTCTCTTTTACCCGTTGATTTGGTAGTGGATGCATTCTTCGCCATTGATATTGTGTTGACCTTCTTTGTGGCTTACTTGGATAAAGGCACATATCTCCTCGTTGATAATCATAAGAAGATAGCTCTACGTTACCTTACAAGCCTGGGGTTCCCCATGGACGTAGCCTCCACTCTCCCATTTCAGGTAATATACAGAATTTTCACTGGAAGGATGCACCGCAGTGAGGCCTTCGGCTTCCTCAACTTACTTCGGTTCTGGCGACTAAGGCGTGTTAGTCAACTTTTCACAAGGCTGGAGAAAGACATACGCTTTAGTTACTTTTATACAAGACTCGCCAAACTAATTTGTGTTACACTGTTGGCAGTTCATACGGCTGGTTGTTTCTACTATTGGTTAGCAGTTCATCATAAAGATTCAGAAAATACATGGATTGGAATTGAAGTCGAAGATTTTCAGAATAGAAGTATCTGGCTTGGGTACACCTATTCGATATATTGGTCCATTGTCACACTTACTACTGTTGGTTATGGGGACTTGCATGCAGTTAATCTAGGGGAGAAGATTTTTAGCATCTGCTACATGCTATGCAACATTGGCCTCACATCTTATTTGATAGGAAACATGACAAATCTCATCGTTCACGCCGCTATTCGAACATTTATCATGAGGGATTCTATAAATGAGATATTGCGATATGGAAGCAAGAATAGACTGCCAGAAGGCTTGAAAGATCAAATGTTGGCGCACATGCAACTCAAGTTCAAGACAGCAGAGTTGAAGCAAGAACAGGTGTTGGAGGATTTACCTAAAGCAATCAGATCCAGTATTGCCCAGCACCTTTTCCGTCATACCGTTGAGAATGCATACTTATTCAAGGGGCTCTCTGAAGACCTTATCGTCCAATTGGTGTCTGAGATGAAAGCAGAGTATTTTCCACCTAAAGTTGACATTATAATACAAAACGAGATACCAACAGATTTCTACATCTTGGTGTCTGGAGCAGTGGATGTGATCTCGTACAAGACTGGAACTGAACAGATTTTGTCAAAGTTGGAATCTCCAAAAATGGCAGGGGAAATTGCTGTGATGTTGAATATCCCACAGCCATTTACAGTGAGAACTAGAAGACTCTCCCAAGTCGTCAGGATCAGTCATCATCATTTTAAGCAATTGATACAACCAAACAGCAATGATGGAAAAGTCCTTTTCTCCAACTTCGCTCAGCACTTGAAGGGACTAAAAAAGGAGGAGCAAAATGAAATACCCTACTTTTCCGATTTGCTGGAAGACCTAAATTTTGAGCGCACAGAACCCAATGAGACACAAAATCAGAGAGCATCAAATTATCATGGAGATGAAAAAATTGAAGGAATACCAGAAGCATCTAAACCACAGCCACCTACAGTTCGCATCAGGGTGATAATTCATGAGCACCATCCAGATGAAAGTACAAAAGATGGCAACAGTAATGGAAAACTGAGAAAAGATTTGGCAAGAGAGGGAGCTCAATTCTCATGGTTGATGGCTCTACAGTAG 1809 42.56 MSTPISETRSPMPLLFRRHSSGEIKNLTSVSSSLLPAFGTVVNDGYTHLNKFVIVPYDRRYRWWQTFLVVLVVYSAWVSPFELAFKKVATGSLLPVDLVVDAFFAIDIVLTFFVAYLDKGTYLLVDNHKKIALRYLTSLGFPMDVASTLPFQVIYRIFTGRMHRSEAFGFLNLLRFWRLRRVSQLFTRLEKDIRFSYFYTRLAKLICVTLLAVHTAGCFYYWLAVHHKDSENTWIGIEVEDFQNRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNLGEKIFSICYMLCNIGLTSYLIGNMTNLIVHAAIRTFIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLKFKTAELKQEQVLEDLPKAIRSSIAQHLFRHTVENAYLFKGLSEDLIVQLVSEMKAEYFPPKVDIIIQNEIPTDFYILVSGAVDVISYKTGTEQILSKLESPKMAGEIAVMLNIPQPFTVRTRRLSQVVRISHHHFKQLIQPNSNDGKVLFSNFAQHLKGLKKEEQNEIPYFSDLLEDLNFERTEPNETQNQRASNYHGDEKIEGIPEASKPQPPTVRIRVIIHEHHPDESTKDGNSNGKLRKDLAREGAQFSWLMALQ* 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38197021 38206249 - CsaV3_3G046820.1 Csa03g04376 525281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04376 602 Pfam Cyclic nucleotide-binding domain 401 484 IPR000595 -
Csa03g04376 602 PANTHER POTASSIUM CHANNEL AKT1 2 62 IPR045319 GO:0005249|GO:0006813
Csa03g04376 602 Gene3D Jelly Rolls 345 510 IPR014710 -
Csa03g04376 602 CDD CAP_ED 381 493 IPR000595 -
Csa03g04376 602 SUPERFAMILY cAMP-binding domain-like 310 501 IPR018490 -
Csa03g04376 602 SMART cnmp_10 381 498 IPR000595 -
Csa03g04376 602 PRINTS EAG/ELK/ERG potassium channel family signature 295 304 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa03g04376 602 PRINTS EAG/ELK/ERG potassium channel family signature 277 288 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa03g04376 602 PRINTS EAG/ELK/ERG potassium channel family signature 251 268 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa03g04376 602 PRINTS EAG/ELK/ERG potassium channel family signature 74 81 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa03g04376 602 PRINTS EAG/ELK/ERG potassium channel family signature 108 117 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa03g04376 602 PRINTS EAG/ELK/ERG potassium channel family signature 97 107 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa03g04376 602 PANTHER POTASSIUM CHANNEL AKT1 62 584 IPR045319 GO:0005249|GO:0006813
Csa03g04376 602 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 2 62 - -
Csa03g04376 602 SUPERFAMILY Voltage-gated potassium channels 56 304 - -
Csa03g04376 602 Pfam Ion transport protein 61 305 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Csa03g04376 602 ProSiteProfiles cAMP/cGMP binding motif profile. 381 500 IPR000595 -
Csa03g04376 602 Gene3D - 63 305 - -
Csa03g04376 602 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 62 584 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02254 Csa-Chr1:19667282 Csa03g04376 Csa-Chr3:38197021 1.05E-170 dispersed
Csa03g01916 Csa-Chr3:14901189 Csa03g04376 Csa-Chr3:38197021 2.23E-155 dispersed
Csa03g04352 Csa-Chr3:38013152 Csa03g04376 Csa-Chr3:38197021 5.09E-114 dispersed
Csa03g04376 Csa-Chr3:38197021 Csa05g01568 Csa-Chr5:18341060 4.23E-92 dispersed
Csa03g04376 Csa-Chr3:38197021 Csa06g01202 Csa-Chr6:10197240 7.12E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04376 K21867 - csv:101215177 1165.21