Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04392 ATGTTCTCCAGTACCCAGTTTGATTCCGCCAGCGGATTTACGTCTTCTCAGACCAATGACTCCTCTTCAGCGAAGAGTCGAGAATCCCCGGGCTTGATTCCGGTAACTGTGAAACAGATCAGCGAAGCTTCACATTCTGGTGAAGAGAAGGCCAACTTTGTAATCAATGGGGTTGATATTACAAATGTTACAATCGTTGGGAAGGTCTCTGAGAAAGCTGAAAGGAATACGGATATCACATTCACGGTAGATGATGGAACAGGAACAATTGGTTGCAAAAGATGGGTAAACGACACTTTTGACACCAACCAAATGGAGGAAATACAAGATGGAATGTACGTTCGGGTGAATGGGCATTTGAAAATGTTCCAAAGCAATAAGCAAATATTTGCATTCTCCGTAAGGCCTGTTACGAACTTTGATGAAATTACCTTCCACTTTATTGAATGCATACACGACCACTTGCGGAACTCCAAGTTACAGAATCTCAAAGGCAATGGATCAACACAGCTCCAAACCTCAGATTCAATTGTGAAGACTCCAGTGCAGAATGGCTCGAATGGATATCATACAACTTCTTCAGCAATACCATCTGAGCAGCACACTGTTGATGTTAAAAAGAGCTGTGATGAATTGGTTCTTGACTATCTGCAGCTGCCCTCCAGCGTTGCAAAAGAAAGAGGAATACACAAAGATGAACTTTCCCAACAACTGAAACTTCCAATGGAGAAAATACTGGATTCCATAAGGTCTCTTGAAGATGAAGGTTTGATATATTCCACCATAGATGAGTTTCATTTCAAGTCTGCTGCATAG 816 41.91 MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLIPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKLPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA* 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38336428 38342789 - CsaV3_3G046980.1 Csa03g04392 525297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04392 271 PANTHER REPLICATION PROTEIN A-RELATED 1 270 IPR040260 -
Csa03g04392 271 Gene3D - 203 271 IPR036388 -
Csa03g04392 271 PIRSF RPA32 1 271 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Csa03g04392 271 Pfam Replication protein A C terminal 154 264 IPR014892 -
Csa03g04392 271 Gene3D - 29 160 IPR012340 -
Csa03g04392 271 SUPERFAMILY Nucleic acid-binding proteins 32 158 IPR012340 -
Csa03g04392 271 MobiDBLite consensus disorder prediction 1 32 - -
Csa03g04392 271 CDD RPA2_DBD_D 62 155 - -
Csa03g04392 271 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 1 270 - -
Csa03g04392 271 Pfam OB-fold nucleic acid binding domain 63 135 IPR004365 GO:0003676
Csa03g04392 271 SUPERFAMILY Winged helix DNA-binding domain 207 269 IPR036390 -
Csa03g04392 271 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04392 K10739 RFA2, RPA2; replication factor A2 - csv:101220176 539.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02156 Csa-Chr1:18703155 Csa03g04392 Csa-Chr3:38336428 1.59E-83 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g214 . . . Bda03g00040 . . Bma04g00039 . . . . . Car09g00447 . . . Cpe06g00385 . . . . . . . Cla05g01790 Cam05g1909 Cec05g1920 Cco05g1983 Clacu05g1902 Cmu05g1783 Cre05g1911 . Cone7ag1755 . . Lsi04g02184 Csa03g04392 Chy04g00310 . . . . . . Bpe04g00030 . . Sed05g1650 Cmo01g01597 Cmo09g00511 . . . . . . Bhi09g02337 Tan01g3718 Cmetu04g2121 . Hepe01g2077 Mch11g0615 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009047 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34