Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g04393 | ATGCCTCGCAAGGTGAGCCACGGGTTAGATTACGATGATGATTACGACGACTACGACGATTACGATTATTATGATAACGATTTCGACGTAGAAGAAAAAGCAACAGAAAAAATACCTGTGACTAAGGAAGAACCAAAAGGGCATAAGCTTTGGCGATGCTCGATTTGCACTTACGACAACGAAGACAGTTTTTCTGTCTGTGATATATGTGGGGTTCTGCGCATCCCTCTGGACAACAACAGAAATACTCAAGATGATAGAACAGTTGAAAACATCTGCAAAGACTCTGGAGTATCAAAAATGGCCAAGTCTCTCTTTGCATCGTTGCCAAATCAGATACCCAAAAGGGCTGTAAAATTGCAAGAACAGGATGATAAAATTGTGGAGGAAAGAGAAGAGAACATCCACAAGATTGGAAATATCCAGGGCCATTTGCATGAATTCCATAATGCTTTTAGTACCTGTAGTCATTTCCATACTAACATAGTCCCTTTCAAGTTTGATATTCCATCCCCAGATGATGTGGTTTCTAATGGATTGCGTTCCTCCAAAGTTGGTTTAAAAGCAGCCAACCACAACGACTTCAACTCTTTAATATTTTCTTCAGACACCACTAAGATATCTGCAAACAATGCAGCATTGACTTCAAAAAGTGCACATAGCGCGTCTACTTTATCGCAAATGAGTAAATCAGGCAATATAGGAGATAAACAGTTGAATACCAAAGGTTCAGCCAACTCAGGGATCTCAATTGGAAAAAAAACAATGGTTATTGAAGAACTCAATACATCAATTAGTGTAACAAAAAATTTACAATCACGTGATAACCGGTCATCAGGCACTTCCTCATCAAAGTCAGCAGGCAAATTTGACAGCATGGATGAGAGCAGCAACCCTTCTGTGGACTGGGAAAGGTCCCAAAGTCTTGCCGGTGGTTTGAACAACATGGTCCTAAATGTTAAATCTGCCTATGCAAATTATATTAGTGGGATTGGGAAAACATCAAATCCGCAGTATAAGCATGATAAGTGGATGCTACCTGATAAGGCTGTAGATACGCTGACTCAGCTGAATCTTGCCATAGTTGGTCATGTTGATTCTGGAAAATCTACACTCTCAGGAAGATTGCTGCACCTATTGGGACGTGTATCCCAAAAAGAAATGCACAAATATGAAAAAGAGGCAAAATCAATGGGCAAGGGCTCCTTTGCTTATGCCTGGGCACTGGATGAGAGTGCAGAGGAAAGGGAGAGAGGAATAACTATGACTGTTGGTGTTGCTTTTTTTGATTCCAAAAGATATCATATTGTTGTGCTTGATTCCCCTGGCCATAAAGATTTTGTTCCAAACTTGATATCTGGGGCCACACAAGCTGATGCTGCAGTTCTTGTTATCGATGCATCTGTTGGTGCATTTGAGGCTGGTATGGACAGTTCAAAGGGGCAAACAAGGGAACATGTGCAATTAATCAGGAGCTTTGGTGTAGATCAGATTATCGTTGCAGTTAACAAAATGGATGTGGTGGAGTATTCCAAAGATCGATATGAGTTTATTAAGCTGCAACTGGGAACCTTTATTCGTTCATGTGGTTATAAAGATTCATCATTGTCTTGGATTCCATTGAGTGCCATGGCAAATCAGAATCTGGTGACTGCCCCTTCTGATGTACATTTTTTATCCTGGTACCGTGGACCTAATCTTTTGGAGGCAATAGATTCTCTTCAACCACCCACTCGAGAATTCTCTAAGCCACTGCTTATGCCGATATGCGACGTTGTTAGATCACTTTCACTAGGACAAGTGTCTGCCTGTGGAAAATTGGAAGCTGGAGCTCTCCAGTCTGGATCTAAGGTTCTAATCATGCCATCTGGAGATAAAGCAACCGTGCGAACTTTGGAACGCAATTCTCAGGCTTGCAAAATCGCAAGAGCGGGGGACAACGTGACTGTTACTCTACAAGGAGTTGAACCAAGTAGCGTGATGTCTGGGGGTGTCCTATGCCATCCTGATTTCCCGGTCGCTGCTGCAAAACATTTGGAATTGAAGATTCTCACCTTGGAATATGCAACACCGATATTAATAGGATCTCAGTTGGAAATTCATATACACCATGTGAAGGAGGCTGCTAGAGTTGCAAGAATAGTCTCATTGCTCGATTCAAAGACGGGGAAGGTCACGAAGAAGGCACCACGCTGTCTCAGTGCTAAACAAAGCGCAGTGATTGAGGTTGTTTTACAAAGCCCTGTTTGCGTCGAAGCATTCTCAACTAGTCGAGCACTTGGTCGGGTATTTCTGAGAACGATGGGAAGAACCATAGCCGTCGGCATTGTGACCCAACTAATCGGAGGCTCTCAATAA | 2358 | 42.45 | MPRKVSHGLDYDDDYDDYDDYDYYDNDFDVEEKATEKIPVTKEEPKGHKLWRCSICTYDNEDSFSVCDICGVLRIPLDNNRNTQDDRTVENICKDSGVSKMAKSLFASLPNQIPKRAVKLQEQDDKIVEEREENIHKIGNIQGHLHEFHNAFSTCSHFHTNIVPFKFDIPSPDDVVSNGLRSSKVGLKAANHNDFNSLIFSSDTTKISANNAALTSKSAHSASTLSQMSKSGNIGDKQLNTKGSANSGISIGKKTMVIEELNTSISVTKNLQSRDNRSSGTSSSKSAGKFDSMDESSNPSVDWERSQSLAGGLNNMVLNVKSAYANYISGIGKTSNPQYKHDKWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSMGKGSFAYAWALDESAEERERGITMTVGVAFFDSKRYHIVVLDSPGHKDFVPNLISGATQADAAVLVIDASVGAFEAGMDSSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKDRYEFIKLQLGTFIRSCGYKDSSLSWIPLSAMANQNLVTAPSDVHFLSWYRGPNLLEAIDSLQPPTREFSKPLLMPICDVVRSLSLGQVSACGKLEAGALQSGSKVLIMPSGDKATVRTLERNSQACKIARAGDNVTVTLQGVEPSSVMSGGVLCHPDFPVAAAKHLELKILTLEYATPILIGSQLEIHIHHVKEAARVARIVSLLDSKTGKVTKKAPRCLSAKQSAVIEVVLQSPVCVEAFSTSRALGRVFLRTMGRTIAVGIVTQLIGGSQ* | 786 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 38342441 | 38349977 | + | CsaV3_3G046990.1 | Csa03g04393 | 525298 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g04393 | 785 | CDD | HBS1-like_II | 584 | 668 | - | - | |
Csa03g04393 | 785 | Gene3D | Translation factors | 675 | 782 | - | - | |
Csa03g04393 | 785 | ProSitePatterns | Zinc finger RanBP2-type signature. | 51 | 70 | IPR001876 | - | |
Csa03g04393 | 785 | Pfam | Elongation factor Tu C-terminal domain | 675 | 780 | IPR004160 | - | |
Csa03g04393 | 785 | Gene3D | - | 348 | 578 | IPR027417 | - | |
Csa03g04393 | 785 | Pfam | Elongation factor Tu domain 2 | 605 | 667 | IPR004161 | GO:0005525 | |
Csa03g04393 | 785 | PANTHER | TRANSLATION FACTOR | 57 | 781 | - | - | |
Csa03g04393 | 785 | CDD | EF1_alpha | 358 | 577 | - | - | |
Csa03g04393 | 785 | Pfam | Elongation factor Tu GTP binding domain | 357 | 574 | IPR000795 | GO:0003924|GO:0005525 | |
Csa03g04393 | 785 | MobiDBLite | consensus disorder prediction | 215 | 246 | - | - | |
Csa03g04393 | 785 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 677 | 781 | IPR009001 | - | |
Csa03g04393 | 785 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 342 | 588 | IPR027417 | - | |
Csa03g04393 | 785 | CDD | HBS1_C_III | 672 | 780 | - | - | |
Csa03g04393 | 785 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 354 | 585 | IPR000795 | GO:0003924|GO:0005525 | |
Csa03g04393 | 785 | SUPERFAMILY | Translation proteins | 576 | 671 | IPR009000 | - | |
Csa03g04393 | 785 | PRINTS | GTP-binding elongation factor signature | 358 | 371 | IPR000795 | GO:0003924|GO:0005525 | |
Csa03g04393 | 785 | PRINTS | GTP-binding elongation factor signature | 417 | 425 | IPR000795 | GO:0003924|GO:0005525 | |
Csa03g04393 | 785 | PRINTS | GTP-binding elongation factor signature | 437 | 447 | IPR000795 | GO:0003924|GO:0005525 | |
Csa03g04393 | 785 | PRINTS | GTP-binding elongation factor signature | 453 | 464 | IPR000795 | GO:0003924|GO:0005525 | |
Csa03g04393 | 785 | PRINTS | GTP-binding elongation factor signature | 498 | 507 | IPR000795 | GO:0003924|GO:0005525 | |
Csa03g04393 | 785 | PANTHER | OS04G0595300 PROTEIN | 57 | 781 | - | - | |
Csa03g04393 | 785 | Gene3D | Translation factors | 582 | 671 | - | - | |
Csa03g04393 | 785 | MobiDBLite | consensus disorder prediction | 269 | 305 | - | - | |
Csa03g04393 | 785 | SUPERFAMILY | Ran binding protein zinc finger-like | 47 | 74 | IPR036443 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g04393 | Csa-Chr3:38342441 | Csa05g01771 | Csa-Chr5:21083649 | 4.00E-96 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g04393 | K14416 | - | csv:101219939 | 1505.35 |