Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04393 ATGCCTCGCAAGGTGAGCCACGGGTTAGATTACGATGATGATTACGACGACTACGACGATTACGATTATTATGATAACGATTTCGACGTAGAAGAAAAAGCAACAGAAAAAATACCTGTGACTAAGGAAGAACCAAAAGGGCATAAGCTTTGGCGATGCTCGATTTGCACTTACGACAACGAAGACAGTTTTTCTGTCTGTGATATATGTGGGGTTCTGCGCATCCCTCTGGACAACAACAGAAATACTCAAGATGATAGAACAGTTGAAAACATCTGCAAAGACTCTGGAGTATCAAAAATGGCCAAGTCTCTCTTTGCATCGTTGCCAAATCAGATACCCAAAAGGGCTGTAAAATTGCAAGAACAGGATGATAAAATTGTGGAGGAAAGAGAAGAGAACATCCACAAGATTGGAAATATCCAGGGCCATTTGCATGAATTCCATAATGCTTTTAGTACCTGTAGTCATTTCCATACTAACATAGTCCCTTTCAAGTTTGATATTCCATCCCCAGATGATGTGGTTTCTAATGGATTGCGTTCCTCCAAAGTTGGTTTAAAAGCAGCCAACCACAACGACTTCAACTCTTTAATATTTTCTTCAGACACCACTAAGATATCTGCAAACAATGCAGCATTGACTTCAAAAAGTGCACATAGCGCGTCTACTTTATCGCAAATGAGTAAATCAGGCAATATAGGAGATAAACAGTTGAATACCAAAGGTTCAGCCAACTCAGGGATCTCAATTGGAAAAAAAACAATGGTTATTGAAGAACTCAATACATCAATTAGTGTAACAAAAAATTTACAATCACGTGATAACCGGTCATCAGGCACTTCCTCATCAAAGTCAGCAGGCAAATTTGACAGCATGGATGAGAGCAGCAACCCTTCTGTGGACTGGGAAAGGTCCCAAAGTCTTGCCGGTGGTTTGAACAACATGGTCCTAAATGTTAAATCTGCCTATGCAAATTATATTAGTGGGATTGGGAAAACATCAAATCCGCAGTATAAGCATGATAAGTGGATGCTACCTGATAAGGCTGTAGATACGCTGACTCAGCTGAATCTTGCCATAGTTGGTCATGTTGATTCTGGAAAATCTACACTCTCAGGAAGATTGCTGCACCTATTGGGACGTGTATCCCAAAAAGAAATGCACAAATATGAAAAAGAGGCAAAATCAATGGGCAAGGGCTCCTTTGCTTATGCCTGGGCACTGGATGAGAGTGCAGAGGAAAGGGAGAGAGGAATAACTATGACTGTTGGTGTTGCTTTTTTTGATTCCAAAAGATATCATATTGTTGTGCTTGATTCCCCTGGCCATAAAGATTTTGTTCCAAACTTGATATCTGGGGCCACACAAGCTGATGCTGCAGTTCTTGTTATCGATGCATCTGTTGGTGCATTTGAGGCTGGTATGGACAGTTCAAAGGGGCAAACAAGGGAACATGTGCAATTAATCAGGAGCTTTGGTGTAGATCAGATTATCGTTGCAGTTAACAAAATGGATGTGGTGGAGTATTCCAAAGATCGATATGAGTTTATTAAGCTGCAACTGGGAACCTTTATTCGTTCATGTGGTTATAAAGATTCATCATTGTCTTGGATTCCATTGAGTGCCATGGCAAATCAGAATCTGGTGACTGCCCCTTCTGATGTACATTTTTTATCCTGGTACCGTGGACCTAATCTTTTGGAGGCAATAGATTCTCTTCAACCACCCACTCGAGAATTCTCTAAGCCACTGCTTATGCCGATATGCGACGTTGTTAGATCACTTTCACTAGGACAAGTGTCTGCCTGTGGAAAATTGGAAGCTGGAGCTCTCCAGTCTGGATCTAAGGTTCTAATCATGCCATCTGGAGATAAAGCAACCGTGCGAACTTTGGAACGCAATTCTCAGGCTTGCAAAATCGCAAGAGCGGGGGACAACGTGACTGTTACTCTACAAGGAGTTGAACCAAGTAGCGTGATGTCTGGGGGTGTCCTATGCCATCCTGATTTCCCGGTCGCTGCTGCAAAACATTTGGAATTGAAGATTCTCACCTTGGAATATGCAACACCGATATTAATAGGATCTCAGTTGGAAATTCATATACACCATGTGAAGGAGGCTGCTAGAGTTGCAAGAATAGTCTCATTGCTCGATTCAAAGACGGGGAAGGTCACGAAGAAGGCACCACGCTGTCTCAGTGCTAAACAAAGCGCAGTGATTGAGGTTGTTTTACAAAGCCCTGTTTGCGTCGAAGCATTCTCAACTAGTCGAGCACTTGGTCGGGTATTTCTGAGAACGATGGGAAGAACCATAGCCGTCGGCATTGTGACCCAACTAATCGGAGGCTCTCAATAA 2358 42.45 MPRKVSHGLDYDDDYDDYDDYDYYDNDFDVEEKATEKIPVTKEEPKGHKLWRCSICTYDNEDSFSVCDICGVLRIPLDNNRNTQDDRTVENICKDSGVSKMAKSLFASLPNQIPKRAVKLQEQDDKIVEEREENIHKIGNIQGHLHEFHNAFSTCSHFHTNIVPFKFDIPSPDDVVSNGLRSSKVGLKAANHNDFNSLIFSSDTTKISANNAALTSKSAHSASTLSQMSKSGNIGDKQLNTKGSANSGISIGKKTMVIEELNTSISVTKNLQSRDNRSSGTSSSKSAGKFDSMDESSNPSVDWERSQSLAGGLNNMVLNVKSAYANYISGIGKTSNPQYKHDKWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSMGKGSFAYAWALDESAEERERGITMTVGVAFFDSKRYHIVVLDSPGHKDFVPNLISGATQADAAVLVIDASVGAFEAGMDSSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKDRYEFIKLQLGTFIRSCGYKDSSLSWIPLSAMANQNLVTAPSDVHFLSWYRGPNLLEAIDSLQPPTREFSKPLLMPICDVVRSLSLGQVSACGKLEAGALQSGSKVLIMPSGDKATVRTLERNSQACKIARAGDNVTVTLQGVEPSSVMSGGVLCHPDFPVAAAKHLELKILTLEYATPILIGSQLEIHIHHVKEAARVARIVSLLDSKTGKVTKKAPRCLSAKQSAVIEVVLQSPVCVEAFSTSRALGRVFLRTMGRTIAVGIVTQLIGGSQ* 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38342441 38349977 + CsaV3_3G046990.1 Csa03g04393 525298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04393 785 CDD HBS1-like_II 584 668 - -
Csa03g04393 785 Gene3D Translation factors 675 782 - -
Csa03g04393 785 ProSitePatterns Zinc finger RanBP2-type signature. 51 70 IPR001876 -
Csa03g04393 785 Pfam Elongation factor Tu C-terminal domain 675 780 IPR004160 -
Csa03g04393 785 Gene3D - 348 578 IPR027417 -
Csa03g04393 785 Pfam Elongation factor Tu domain 2 605 667 IPR004161 GO:0005525
Csa03g04393 785 PANTHER TRANSLATION FACTOR 57 781 - -
Csa03g04393 785 CDD EF1_alpha 358 577 - -
Csa03g04393 785 Pfam Elongation factor Tu GTP binding domain 357 574 IPR000795 GO:0003924|GO:0005525
Csa03g04393 785 MobiDBLite consensus disorder prediction 215 246 - -
Csa03g04393 785 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 677 781 IPR009001 -
Csa03g04393 785 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 588 IPR027417 -
Csa03g04393 785 CDD HBS1_C_III 672 780 - -
Csa03g04393 785 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 354 585 IPR000795 GO:0003924|GO:0005525
Csa03g04393 785 SUPERFAMILY Translation proteins 576 671 IPR009000 -
Csa03g04393 785 PRINTS GTP-binding elongation factor signature 358 371 IPR000795 GO:0003924|GO:0005525
Csa03g04393 785 PRINTS GTP-binding elongation factor signature 417 425 IPR000795 GO:0003924|GO:0005525
Csa03g04393 785 PRINTS GTP-binding elongation factor signature 437 447 IPR000795 GO:0003924|GO:0005525
Csa03g04393 785 PRINTS GTP-binding elongation factor signature 453 464 IPR000795 GO:0003924|GO:0005525
Csa03g04393 785 PRINTS GTP-binding elongation factor signature 498 507 IPR000795 GO:0003924|GO:0005525
Csa03g04393 785 PANTHER OS04G0595300 PROTEIN 57 781 - -
Csa03g04393 785 Gene3D Translation factors 582 671 - -
Csa03g04393 785 MobiDBLite consensus disorder prediction 269 305 - -
Csa03g04393 785 SUPERFAMILY Ran binding protein zinc finger-like 47 74 IPR036443 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04393 Csa-Chr3:38342441 Csa05g01771 Csa-Chr5:21083649 4.00E-96 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04393 K14416 - csv:101219939 1505.35