Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04394 ATGCCGGGTCTAACTTGTAATGCCTGTAACAAAGAATTTCTAGACGTCGATGAGCAAAAGCTTCACTACAAATCCGAATGGCATCGATATAATCTTAAGCGCAAGGTTGCTAATGTTCCTGGAGTTACAGAGGCATTGTTTTTAGCTAGACAATCTGCTGCAGCTGCACAAGAGAATGCCAAATCAAGAGAGAACTCAATGTTATACTCTTGTGGCCTTTGTAGCAAAGCTTATAGGAGTGCTCAGGCACATGCCCAACACCTTAAATCTAGGAGTCATATCATTCGAGCTTCGCAAGGAGCACATGATCAAGAAGTTGAAAAGCCAATAATTAAGCCCCTTCCCCAGCGAATTTCCAACAAGGCACCCCAACAAAGTGAGGAGGAAGAGAGTGAGGATGAGTGGGAAGAAGTTGATCCCGATGAAGACATGGTTGATGGAAATGAGGATGAGAATGAGGATGATGATACTGATGCCATTGAGGTGGACTTGGATCCATCATGCTGCTTCATGTGTGATCTAGAGCATGATACCATTGAGAGCTGCATGGTCCACATGCACAAGAAACATGGATTCTTTATTCCTGATATTGAATATTTGAAGGATCCAAAAGGCTTCCTTACATATGTCGGCCTGAAGGTGATGAGGGATTTCAGGTGTCTGTACTGCAATGATAATTGTCTTCCTTTTAGCAGCTTGGAAGCTGTTAGGAAGCATATGGAAGCAAAAAGCCATTGCAAAGTGCATTATGGTGATGAAGACGAGAATGAAGAAGTAGAGTTGGAGGAATTTTATGATTACAGCAGCAGTTATGTCGATGGAAGTGGCAACCAGCTCGTACCATCAGGTGCGCAAGACAACACTGTCCAATTTGGTAGTGGTGGAGCAGAGCTCATCTTAGTTCAAGGAAGCAGCGAACGACAATCGACTAAAACACTTGGTTCCAGACAATTTCTACGTTATTATCGCCAAAAACCACGACCATCTCCTGCAAACGATGCAGCCATTACTGCTGTATTGGCAGCTAGGTACAGGAGTATGGGATTGGCAACGGTCCAATCGAGAGAAAAGATGATCAGGATGAAGGTGATGAAAGAAATGAATCGAACCGGGTTGGAAGCAATGCGCACCAAAATCGGATTGAAGAACAACGTAATCCGAAACCTGCCTAAGAATGTTCCACACTAG 1188 43.86 MPGLTCNACNKEFLDVDEQKLHYKSEWHRYNLKRKVANVPGVTEALFLARQSAAAAQENAKSRENSMLYSCGLCSKAYRSAQAHAQHLKSRSHIIRASQGAHDQEVEKPIIKPLPQRISNKAPQQSEEEESEDEWEEVDPDEDMVDGNEDENEDDDTDAIEVDLDPSCCFMCDLEHDTIESCMVHMHKKHGFFIPDIEYLKDPKGFLTYVGLKVMRDFRCLYCNDNCLPFSSLEAVRKHMEAKSHCKVHYGDEDENEEVELEEFYDYSSSYVDGSGNQLVPSGAQDNTVQFGSGGAELILVQGSSERQSTKTLGSRQFLRYYRQKPRPSPANDAAITAVLAARYRSMGLATVQSREKMIRMKVMKEMNRTGLEAMRTKIGLKNNVIRNLPKNVPH* 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38350922 38353943 - CsaV3_3G047000.1 Csa03g04394 525299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04394 395 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Csa03g04394 395 MobiDBLite consensus disorder prediction 99 156 - -
Csa03g04394 395 MobiDBLite consensus disorder prediction 127 156 - -
Csa03g04394 395 Pfam C2H2 type zinc-finger (2 copies) 169 270 IPR041661 -
Csa03g04394 395 SUPERFAMILY beta-beta-alpha zinc fingers 153 242 IPR036236 -
Csa03g04394 395 PANTHER ZINC FINGER PROTEIN 622 1 394 IPR040025 -
Csa03g04394 395 SUPERFAMILY beta-beta-alpha zinc fingers 65 99 IPR036236 -
Csa03g04394 395 SMART c2h2final6 4 28 IPR013087 -
Csa03g04394 395 SMART c2h2final6 69 93 IPR013087 -
Csa03g04394 395 SMART c2h2final6 167 190 IPR013087 -
Csa03g04394 395 SMART c2h2final6 218 245 IPR013087 -
Csa03g04394 395 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Csa03g04394 395 PANTHER ZINC FINGER PROTEIN-RELATED 1 394 - -
Csa03g04394 395 ProSitePatterns Zinc finger C2H2 type domain signature. 71 93 IPR013087 -
Csa03g04394 395 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Csa03g04394 395 SMART ZnF_U1_5 66 100 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04394 Csa-Chr3:38350922 Csa06g02174 Csa-Chr6:19598352 3.63E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04394 K14816 - csv:101219700 724.931