Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g04401 | ATGGCTAATCCCATCACTCTCCAACAGATTCCTAATGACTCTGTTGATCTTGAACATATTCCAATTGATGATGTGTTTGAGAAACTCAAATGCACAGAAGAAGGTCTTACTTCAGAGGAAGGGGCTAGTCGGCTTCAAGTTTTTGGACCTAACAAGCTTGAAGAGAAGAAGGAAAGCAAAATTCTGAAATTTATGGGATTTATGTGGAATCCCCTCTCATGGGTTATGGAAATAGCCGCGATCATGGCTATTGTTTTGGCAAATGGCGGTGGAAGGCCTCCAGACTGGCAGGACTTTGTGGGAGTCATTGCGCTGCTTTTCATCAATTCAACTATCTCTTTTATTGAAGAAAACAATGCAGGAAATGCAGCTGCAGCTCTTATGGCTGGTCTTGCTCCCAAAACCAAGGTTCTTAGGGACGGCCGGTGGTGTGAGCAAGATGCTTCCATTCTTGTTCCTGGAGACATAATTAGTATCAAATTAGGAGACATAATCCCTGCTGATGCTCGTCTTCTCCAGGGAGACCCTTTGAAAATTGACCAATCTGCTCTAACCGGCGAGTCCCTTCCTGTTACCAAAAATCCTTCAGACGAAGTTTTCTCTGGATCAACTTGTAAGCAGGGAGAAATTGAAGCAGTAGTGATTGCGACTGGTGTGCATACCTTTTTTGGTAAAGCTGCTCATTTAGTGGACAACACCAATCAAATTGGACATTTCCAAAAAGTTCTCACTGCCATTGGAAATTTTTGTATTTGCTCCATCACCATTGGAATTATTATCGAGATTGTTGTCATGTATCCTATTCAACATCGTGCTTATAGGGATGGTATTGACAATTTGTTGGTGCTTTTGATCGGAGGAATTCCTATTGCCATGCCAACGGTTTTGTCTGTCACCATGGCCATTGGTTCCCACCGACTTTCCAAACAAGGTGCAATTACCAAGCGTATGACCGCTATTGAGGAGATGGCTGGCATGGATGTCCTCTGCAGTGACAAGACGGGAACACTAACTTTGAATAAACTCACTGTTGACCAAAACTTGACGGAAGTCTTTGTGGTGGGTATGGATAAAGAACATGTCATCCTTCTTGCAGCAAGGGCTTCTAGAACAGAAAATCAGGATGCCATTGATACTGCTATTGTTGGGATGTTGGCAGATCCAAAAGAGGCACGAGCTGGTATTAGAGAGGTTCATTTTTTTCCATTCAACCCTGTAGATAAGAGAACTGCTCTTACTTATATTGATTCTAGTGATAATTGGCATCGAGTTAGCAAAGGTGCTCCAGAGCAGATCTTAAATCTTTGCAATTCCAGCGAAGCCATTAGGAAAAAAGTTCATGGAGTGATCGATAAGTTTGCTGAATGTGGACTCCGATCCCTGGGTGTTGCTAGACAGGAAGTACCTGAGAGCACCAAAGAAAGTCCAGGAGAACCATGGCAACTTGTTGGTTTATTAGCTCTGTTTGATCCTCCAAGGCATGATAGTGCTGAAACCATCCGAAGGGCTCTGAACCTTGGAGTAAATGTGAAGATGATTACTGGGGACCAACTGGCCATTGCCAAGGAAACTGGTCGGAGACTTGGTATGGGTTCAAATATGTATCCTTCATCTGCATTACTTTCTCAAGACAGGGTTTCAACAGATTCCCTTCCTGTGGATGAGTTGATTGAAACAGCTGATGGGTTTGCTGGTGTATTTCCAGAACACAAATATGAAATTGTGAGAAGGTTACAAGAGAAAAAACATATTTGTGGAATGACTGGAGATGGCGTAAATGATGCTCCTGCACTAAAAAAGGCAGATATTGGAATTGCTGTTGCTGATGCAACTGATGCAGCCAGGAGTGCTTCCGACATCGTCCTCACCGAACCTGGATTGAGTGTCATCATTAGTGCAGTACTGACCAGCAGGGCTATTTTCCAAAGGATGAAGAATTATACGATTTATGCTGTTTCCATCACCATTCGTATAGTGTTTGGTTTTTTGTTGATTGCTTTGATTTGGAAGTTTGATTTCGCTCCATTCATGGTTTTAATTATAGCTATTTTAAACGATGGAACAATCATGACTATTTCAAAGGATCGAGTTAAGCCTTCCCCCCTTCCAGATAATTGGAAGTTGAAGGAAATTTTCGCTACTGGCATCGTGTTAGGAGGATACTTGGCCTTGATGACAGTGCTGTTCTTTTGGATCATGAAAGATACTGATTTTTTCACGAGCATATTCTGTGTACCATCTCTAAGGAACAACAACCAGAAAATGATGGCAGCATTGTATCTACAAGTCAGTATCGTGAGCCAGGCCCTTATTTTCGTCACACGGTCACGAAGTTGGTCCTTCGTCGAACGTCCTGGATTTTTGTTAGTGTTTGCTTTCATAATGGCCCAGCTTATTGCAACTGTAATAGCAGTGTACGCAAAGTGGAGTTTTGCAAGGATACATGGCGCCGGCTGGGGGTGGGCTGCTGTCATTTGGCTATATAGTTTGATAACTTATATCCCTCTTGATATTCTCAAATTTACCATTCGCTATGCTCTTAGTGGAAGGGCTTGGAACAACCTTGTGCAAAATAAGACTGCTTTTACAACAAAGAAAAATTATGGCAAAGAAGAGAGAGAAGCACAATGGGCTACCTCACAAAGAACTATTCATGGTCTTCAACCACCTCAAACCAGCAACATTGTTTCTGATAAAATCAGTTATGGTGGCGAGCTTTCCGAAATAGCCGAGCAAGCCAAGCGACGAGCTGAAATTGTCAGGCTTCGTGAATTGCACACTCTGAAAGGTCGGGTCGAGTCGGTAGTGAAGCTGAAAGGTCTAGACATTGATACTATTAATCAACATTATACAGTCTAA | 2859 | 42.57 | MANPITLQQIPNDSVDLEHIPIDDVFEKLKCTEEGLTSEEGASRLQVFGPNKLEEKKESKILKFMGFMWNPLSWVMEIAAIMAIVLANGGGRPPDWQDFVGVIALLFINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWCEQDASILVPGDIISIKLGDIIPADARLLQGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDNTNQIGHFQKVLTAIGNFCICSITIGIIIEIVVMYPIQHRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSKQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDQNLTEVFVVGMDKEHVILLAARASRTENQDAIDTAIVGMLADPKEARAGIREVHFFPFNPVDKRTALTYIDSSDNWHRVSKGAPEQILNLCNSSEAIRKKVHGVIDKFAECGLRSLGVARQEVPESTKESPGEPWQLVGLLALFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGSNMYPSSALLSQDRVSTDSLPVDELIETADGFAGVFPEHKYEIVRRLQEKKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLLIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPLPDNWKLKEIFATGIVLGGYLALMTVLFFWIMKDTDFFTSIFCVPSLRNNNQKMMAALYLQVSIVSQALIFVTRSRSWSFVERPGFLLVFAFIMAQLIATVIAVYAKWSFARIHGAGWGWAAVIWLYSLITYIPLDILKFTIRYALSGRAWNNLVQNKTAFTTKKNYGKEEREAQWATSQRTIHGLQPPQTSNIVSDKISYGGELSEIAEQAKRRAEIVRLRELHTLKGRVESVVKLKGLDIDTINQHYTV* | 953 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 38387284 | 38392799 | + | CsaV3_3G047070.1 | Csa03g04401 | 525306 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g04401 | 952 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 332 | 338 | IPR018303 | - | |
Csa03g04401 | 952 | SUPERFAMILY | HAD-like | 326 | 635 | IPR036412 | - | |
Csa03g04401 | 952 | Gene3D | - | 901 | 952 | - | - | |
Csa03g04401 | 952 | Gene3D | - | 342 | 489 | IPR023299 | GO:0000166 | |
Csa03g04401 | 952 | TIGRFAM | ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase | 35 | 806 | IPR006534 | GO:0008553|GO:0016021|GO:0120029 | |
Csa03g04401 | 952 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 563 | 678 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa03g04401 | 952 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 103 | 346 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa03g04401 | 952 | PANTHER | PLASMA MEMBRANE ATPASE | 3 | 932 | - | - | |
Csa03g04401 | 952 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 16 | 847 | IPR023298 | - | |
Csa03g04401 | 952 | SMART | Cation_ATPase_N_a_2 | 16 | 88 | IPR004014 | - | |
Csa03g04401 | 952 | PRINTS | P-type cation-transporting ATPase superfamily signature | 180 | 194 | - | - | |
Csa03g04401 | 952 | PRINTS | P-type cation-transporting ATPase superfamily signature | 330 | 344 | - | - | |
Csa03g04401 | 952 | PRINTS | P-type cation-transporting ATPase superfamily signature | 484 | 495 | - | - | |
Csa03g04401 | 952 | PRINTS | P-type cation-transporting ATPase superfamily signature | 506 | 516 | - | - | |
Csa03g04401 | 952 | PRINTS | P-type cation-transporting ATPase superfamily signature | 588 | 607 | - | - | |
Csa03g04401 | 952 | PRINTS | P-type cation-transporting ATPase superfamily signature | 611 | 623 | - | - | |
Csa03g04401 | 952 | Pfam | E1-E2 ATPase | 132 | 310 | - | - | |
Csa03g04401 | 952 | SFLD | p-type atpase | 312 | 639 | IPR044492 | - | |
Csa03g04401 | 952 | SUPERFAMILY | Calcium ATPase, transduction domain A | 133 | 230 | IPR008250 | - | |
Csa03g04401 | 952 | Gene3D | - | 327 | 625 | IPR023214 | - | |
Csa03g04401 | 952 | PRINTS | H+-transporting ATPase (proton pump) signature | 446 | 464 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa03g04401 | 952 | PRINTS | H+-transporting ATPase (proton pump) signature | 560 | 576 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa03g04401 | 952 | PRINTS | H+-transporting ATPase (proton pump) signature | 588 | 604 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa03g04401 | 952 | PRINTS | H+-transporting ATPase (proton pump) signature | 619 | 644 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa03g04401 | 952 | PRINTS | H+-transporting ATPase (proton pump) signature | 760 | 781 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa03g04401 | 952 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 3 | 932 | - | - | |
Csa03g04401 | 952 | Gene3D | - | 133 | 217 | - | - | |
Csa03g04401 | 952 | Pfam | Cation transporter/ATPase, N-terminus | 19 | 82 | IPR004014 | - | |
Csa03g04401 | 952 | CDD | P-type_ATPase_H | 35 | 841 | IPR006534 | GO:0008553|GO:0016021|GO:0120029 | |
Csa03g04401 | 952 | Pfam | haloacid dehalogenase-like hydrolase | 326 | 602 | - | - | |
Csa03g04401 | 952 | Gene3D | - | 95 | 815 | - | - | |
Csa03g04401 | 952 | SFLD | C1.7: P-type atpase like | 312 | 639 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g04401 | Csa-Chr3:38387284 | Csa04g00175 | Csa-Chr4:1008500 | 0 | dispersed | |
Csa02g02323 | Csa-Chr2:20671660 | Csa03g04401 | Csa-Chr3:38387284 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g04401 | K01535 | - | csv:101219224 | 1811.58 |