Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04401 ATGGCTAATCCCATCACTCTCCAACAGATTCCTAATGACTCTGTTGATCTTGAACATATTCCAATTGATGATGTGTTTGAGAAACTCAAATGCACAGAAGAAGGTCTTACTTCAGAGGAAGGGGCTAGTCGGCTTCAAGTTTTTGGACCTAACAAGCTTGAAGAGAAGAAGGAAAGCAAAATTCTGAAATTTATGGGATTTATGTGGAATCCCCTCTCATGGGTTATGGAAATAGCCGCGATCATGGCTATTGTTTTGGCAAATGGCGGTGGAAGGCCTCCAGACTGGCAGGACTTTGTGGGAGTCATTGCGCTGCTTTTCATCAATTCAACTATCTCTTTTATTGAAGAAAACAATGCAGGAAATGCAGCTGCAGCTCTTATGGCTGGTCTTGCTCCCAAAACCAAGGTTCTTAGGGACGGCCGGTGGTGTGAGCAAGATGCTTCCATTCTTGTTCCTGGAGACATAATTAGTATCAAATTAGGAGACATAATCCCTGCTGATGCTCGTCTTCTCCAGGGAGACCCTTTGAAAATTGACCAATCTGCTCTAACCGGCGAGTCCCTTCCTGTTACCAAAAATCCTTCAGACGAAGTTTTCTCTGGATCAACTTGTAAGCAGGGAGAAATTGAAGCAGTAGTGATTGCGACTGGTGTGCATACCTTTTTTGGTAAAGCTGCTCATTTAGTGGACAACACCAATCAAATTGGACATTTCCAAAAAGTTCTCACTGCCATTGGAAATTTTTGTATTTGCTCCATCACCATTGGAATTATTATCGAGATTGTTGTCATGTATCCTATTCAACATCGTGCTTATAGGGATGGTATTGACAATTTGTTGGTGCTTTTGATCGGAGGAATTCCTATTGCCATGCCAACGGTTTTGTCTGTCACCATGGCCATTGGTTCCCACCGACTTTCCAAACAAGGTGCAATTACCAAGCGTATGACCGCTATTGAGGAGATGGCTGGCATGGATGTCCTCTGCAGTGACAAGACGGGAACACTAACTTTGAATAAACTCACTGTTGACCAAAACTTGACGGAAGTCTTTGTGGTGGGTATGGATAAAGAACATGTCATCCTTCTTGCAGCAAGGGCTTCTAGAACAGAAAATCAGGATGCCATTGATACTGCTATTGTTGGGATGTTGGCAGATCCAAAAGAGGCACGAGCTGGTATTAGAGAGGTTCATTTTTTTCCATTCAACCCTGTAGATAAGAGAACTGCTCTTACTTATATTGATTCTAGTGATAATTGGCATCGAGTTAGCAAAGGTGCTCCAGAGCAGATCTTAAATCTTTGCAATTCCAGCGAAGCCATTAGGAAAAAAGTTCATGGAGTGATCGATAAGTTTGCTGAATGTGGACTCCGATCCCTGGGTGTTGCTAGACAGGAAGTACCTGAGAGCACCAAAGAAAGTCCAGGAGAACCATGGCAACTTGTTGGTTTATTAGCTCTGTTTGATCCTCCAAGGCATGATAGTGCTGAAACCATCCGAAGGGCTCTGAACCTTGGAGTAAATGTGAAGATGATTACTGGGGACCAACTGGCCATTGCCAAGGAAACTGGTCGGAGACTTGGTATGGGTTCAAATATGTATCCTTCATCTGCATTACTTTCTCAAGACAGGGTTTCAACAGATTCCCTTCCTGTGGATGAGTTGATTGAAACAGCTGATGGGTTTGCTGGTGTATTTCCAGAACACAAATATGAAATTGTGAGAAGGTTACAAGAGAAAAAACATATTTGTGGAATGACTGGAGATGGCGTAAATGATGCTCCTGCACTAAAAAAGGCAGATATTGGAATTGCTGTTGCTGATGCAACTGATGCAGCCAGGAGTGCTTCCGACATCGTCCTCACCGAACCTGGATTGAGTGTCATCATTAGTGCAGTACTGACCAGCAGGGCTATTTTCCAAAGGATGAAGAATTATACGATTTATGCTGTTTCCATCACCATTCGTATAGTGTTTGGTTTTTTGTTGATTGCTTTGATTTGGAAGTTTGATTTCGCTCCATTCATGGTTTTAATTATAGCTATTTTAAACGATGGAACAATCATGACTATTTCAAAGGATCGAGTTAAGCCTTCCCCCCTTCCAGATAATTGGAAGTTGAAGGAAATTTTCGCTACTGGCATCGTGTTAGGAGGATACTTGGCCTTGATGACAGTGCTGTTCTTTTGGATCATGAAAGATACTGATTTTTTCACGAGCATATTCTGTGTACCATCTCTAAGGAACAACAACCAGAAAATGATGGCAGCATTGTATCTACAAGTCAGTATCGTGAGCCAGGCCCTTATTTTCGTCACACGGTCACGAAGTTGGTCCTTCGTCGAACGTCCTGGATTTTTGTTAGTGTTTGCTTTCATAATGGCCCAGCTTATTGCAACTGTAATAGCAGTGTACGCAAAGTGGAGTTTTGCAAGGATACATGGCGCCGGCTGGGGGTGGGCTGCTGTCATTTGGCTATATAGTTTGATAACTTATATCCCTCTTGATATTCTCAAATTTACCATTCGCTATGCTCTTAGTGGAAGGGCTTGGAACAACCTTGTGCAAAATAAGACTGCTTTTACAACAAAGAAAAATTATGGCAAAGAAGAGAGAGAAGCACAATGGGCTACCTCACAAAGAACTATTCATGGTCTTCAACCACCTCAAACCAGCAACATTGTTTCTGATAAAATCAGTTATGGTGGCGAGCTTTCCGAAATAGCCGAGCAAGCCAAGCGACGAGCTGAAATTGTCAGGCTTCGTGAATTGCACACTCTGAAAGGTCGGGTCGAGTCGGTAGTGAAGCTGAAAGGTCTAGACATTGATACTATTAATCAACATTATACAGTCTAA 2859 42.57 MANPITLQQIPNDSVDLEHIPIDDVFEKLKCTEEGLTSEEGASRLQVFGPNKLEEKKESKILKFMGFMWNPLSWVMEIAAIMAIVLANGGGRPPDWQDFVGVIALLFINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWCEQDASILVPGDIISIKLGDIIPADARLLQGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDNTNQIGHFQKVLTAIGNFCICSITIGIIIEIVVMYPIQHRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSKQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDQNLTEVFVVGMDKEHVILLAARASRTENQDAIDTAIVGMLADPKEARAGIREVHFFPFNPVDKRTALTYIDSSDNWHRVSKGAPEQILNLCNSSEAIRKKVHGVIDKFAECGLRSLGVARQEVPESTKESPGEPWQLVGLLALFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGSNMYPSSALLSQDRVSTDSLPVDELIETADGFAGVFPEHKYEIVRRLQEKKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLLIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPLPDNWKLKEIFATGIVLGGYLALMTVLFFWIMKDTDFFTSIFCVPSLRNNNQKMMAALYLQVSIVSQALIFVTRSRSWSFVERPGFLLVFAFIMAQLIATVIAVYAKWSFARIHGAGWGWAAVIWLYSLITYIPLDILKFTIRYALSGRAWNNLVQNKTAFTTKKNYGKEEREAQWATSQRTIHGLQPPQTSNIVSDKISYGGELSEIAEQAKRRAEIVRLRELHTLKGRVESVVKLKGLDIDTINQHYTV* 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38387284 38392799 + CsaV3_3G047070.1 Csa03g04401 525306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04401 952 ProSitePatterns E1-E2 ATPases phosphorylation site. 332 338 IPR018303 -
Csa03g04401 952 SUPERFAMILY HAD-like 326 635 IPR036412 -
Csa03g04401 952 Gene3D - 901 952 - -
Csa03g04401 952 Gene3D - 342 489 IPR023299 GO:0000166
Csa03g04401 952 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 35 806 IPR006534 GO:0008553|GO:0016021|GO:0120029
Csa03g04401 952 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 563 678 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa03g04401 952 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 103 346 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa03g04401 952 PANTHER PLASMA MEMBRANE ATPASE 3 932 - -
Csa03g04401 952 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 847 IPR023298 -
Csa03g04401 952 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Csa03g04401 952 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Csa03g04401 952 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Csa03g04401 952 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Csa03g04401 952 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
Csa03g04401 952 PRINTS P-type cation-transporting ATPase superfamily signature 588 607 - -
Csa03g04401 952 PRINTS P-type cation-transporting ATPase superfamily signature 611 623 - -
Csa03g04401 952 Pfam E1-E2 ATPase 132 310 - -
Csa03g04401 952 SFLD p-type atpase 312 639 IPR044492 -
Csa03g04401 952 SUPERFAMILY Calcium ATPase, transduction domain A 133 230 IPR008250 -
Csa03g04401 952 Gene3D - 327 625 IPR023214 -
Csa03g04401 952 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa03g04401 952 PRINTS H+-transporting ATPase (proton pump) signature 560 576 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa03g04401 952 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa03g04401 952 PRINTS H+-transporting ATPase (proton pump) signature 619 644 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa03g04401 952 PRINTS H+-transporting ATPase (proton pump) signature 760 781 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa03g04401 952 PANTHER CALCIUM-TRANSPORTING ATPASE 3 932 - -
Csa03g04401 952 Gene3D - 133 217 - -
Csa03g04401 952 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Csa03g04401 952 CDD P-type_ATPase_H 35 841 IPR006534 GO:0008553|GO:0016021|GO:0120029
Csa03g04401 952 Pfam haloacid dehalogenase-like hydrolase 326 602 - -
Csa03g04401 952 Gene3D - 95 815 - -
Csa03g04401 952 SFLD C1.7: P-type atpase like 312 639 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04401 Csa-Chr3:38387284 Csa04g00175 Csa-Chr4:1008500 0 dispersed
Csa02g02323 Csa-Chr2:20671660 Csa03g04401 Csa-Chr3:38387284 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04401 K01535 - csv:101219224 1811.58