Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04405 ATGGATGGGTATTCTAGCAAAAGAGTTCATGTGGGAATTGTTTCTAGGAAGGGACCTGGTGTAGTTTTGAGGGATAACATGAAGCACAGGGATCAAAGTAATAAATGCAGCAATCGCCCTGGCTGCAATGGCAGGATATGCTCCAGTAGTGGTGCACAAGTTGGTTGTTCGAGTAAATTCAGCTCAAAAAGACCATTCCACAGCTCAAGTGGTAAAGAAGGTTTTGGAAGTTCCTCTGGAATCCAAAATCTCAGGAAATCTTTTCCAGATCCATTTGGAAAGTTATCATCTAAGCTTGAAACAGATTCATCTGAAAATGATAGCATTCAGGATGACTTGGAAGAACTGGAATTCATCTCACCTCATGGATTGTTCCATACAGGGCTTCATGCGAAATCTGAAAGTCCAGTGGTCGCTAATGCCATGCTGATGGAAAGGGGAAGCTGCAGTACGGACTCTAGCAATATATCTAAGAGAGTCTCCATTCAAAGTTATGAAGTGGACAATGAAGATCCTCATGCATCAATGAGGCCTAGAAGTCTTTGCCAGAAATCAAATGGTAGTTCCAGTAGGTACAATTCAAGAAACCTCACATGTGATTCTGTATCTGAAGTAATTCCATCAAATAATTCTTTACTGGAATCAAACCTTGTGAGAAGAAAGAATGTAATGAAGAAGATGACATTTGATGGTGAGAATAGTTCCAGTTCTAGAGGAAAGAAGGTGAGTGGAACTTCCCGAGGACAAAAGTGTATCTACCGGCATGGTATCTCTATTTCTGATCAAATACCAGGTCGAAACGTGTTTCACAGGAAAAATATTCTTTCATCACATGGGACTCGAAGTTTGACTAGTGTATGTAGTGGGGGAAGGCATTCTTACCAAGGCATAAGTGACAATTTGTCACTGCAGGATTCACTAGCAACGACTTCATGGAGGCCTCAGGCTAATGTCTCCAGTTCCTCAAATGCTTCTACTTCACTTCAGTTATCTTCAGAATCACACTCCAGGCAGCACACTACTTCCCCCAAACCAGAAGGCTATAGTCAAAGGCTACATGACATTAGACAAGCTACTTCTGCAGAAGTTGGTCTTTCAAGCACTTCAACAAATGCAAGCCGTTTTAGATGCCACAATGTCGATGGAATTGCTGAGGTACTATTGGCGTTGGAGAGAATTGAACAAGAGGAGGAGCTAACTTATGAGCAAACCATTCTTCTTGAGACGAGTGTGTTCCTCAATAGCCTGAACATCTATGATCAGCACAGAGACATGAGACTTGACATTGATAACATGACATATGAGCAACTTTTAGATTTAGAAGAGAAAATGGGGACAGTAAGCACAGCACTGTCCGAAGAAGCGCTGACAAAATGCCTTAATAGAAGCATCTATCAGTCCAAACCTAAAGGAGTAACAGCCATGGATCCTATCGGGGAACTGAGTGATGTCAAATGCTGTATTTGTCAGGAAGAATATGTGAGTGGAGATGAAGTTGGGAGACTGCAATGTGAGCATCAGTATCATGTAGCATGCATTCAACAATGGTTGAGGTTGAAGAACTGGTGCCCCATTTGTAAATCATCAGCAGCAACTTCTCACCCTTTCAGATGA 1614 41.95 MDGYSSKRVHVGIVSRKGPGVVLRDNMKHRDQSNKCSNRPGCNGRICSSSGAQVGCSSKFSSKRPFHSSSGKEGFGSSSGIQNLRKSFPDPFGKLSSKLETDSSENDSIQDDLEELEFISPHGLFHTGLHAKSESPVVANAMLMERGSCSTDSSNISKRVSIQSYEVDNEDPHASMRPRSLCQKSNGSSSRYNSRNLTCDSVSEVIPSNNSLLESNLVRRKNVMKKMTFDGENSSSSRGKKVSGTSRGQKCIYRHGISISDQIPGRNVFHRKNILSSHGTRSLTSVCSGGRHSYQGISDNLSLQDSLATTSWRPQANVSSSSNASTSLQLSSESHSRQHTTSPKPEGYSQRLHDIRQATSAEVGLSSTSTNASRFRCHNVDGIAEVLLALERIEQEEELTYEQTILLETSVFLNSLNIYDQHRDMRLDIDNMTYEQLLDLEEKMGTVSTALSEEALTKCLNRSIYQSKPKGVTAMDPIGELSDVKCCICQEEYVSGDEVGRLQCEHQYHVACIQQWLRLKNWCPICKSSAATSHPFR* 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38407779 38411575 - CsaV3_3G047110.1 Csa03g04405 525310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04405 537 Pfam Ring finger domain 485 527 IPR001841 -
Csa03g04405 537 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 531 IPR045191 GO:0061630
Csa03g04405 537 MobiDBLite consensus disorder prediction 314 350 - -
Csa03g04405 537 SMART ring_2 486 526 IPR001841 -
Csa03g04405 537 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 531 - -
Csa03g04405 537 MobiDBLite consensus disorder prediction 62 85 - -
Csa03g04405 537 SUPERFAMILY RING/U-box 475 531 - -
Csa03g04405 537 MobiDBLite consensus disorder prediction 62 87 - -
Csa03g04405 537 MobiDBLite consensus disorder prediction 166 189 - -
Csa03g04405 537 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 471 533 IPR013083 -
Csa03g04405 537 MobiDBLite consensus disorder prediction 228 247 - -
Csa03g04405 537 MobiDBLite consensus disorder prediction 228 244 - -
Csa03g04405 537 ProSiteProfiles Zinc finger RING-type profile. 486 527 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04405 - - - csv:101218753 1043.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04405 Csa-Chr3:38407779 Csa04g00845 Csa-Chr4:5934139 1.36E-26 dispersed
Csa01g00694 Csa-Chr1:4402194 Csa03g04405 Csa-Chr3:38407779 2.32E-31 transposed
Csa02g01933 Csa-Chr2:18146642 Csa03g04405 Csa-Chr3:38407779 1.53E-38 transposed
Csa02g02320 Csa-Chr2:20658172 Csa03g04405 Csa-Chr3:38407779 4.46E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g200 Blo01g01341 . Bda01g00701 . . . . Bma01g02125 . Cmo12g00245 . Cma05g00629 Car09g00453 Car12g00277 Sed01g1303 Cpe07g00253 Cpe06g00391 Bhi04g01083 Tan02g2620 Cmetu03g2117 . Hepe10g0318 . Lcy13g1351 . . . . . . . . Cone7ag1763 . . Lsi04g02195 Csa03g04405 Chy04g00296 . Blo17g00044 . . Bda13g01298 . . Bma01g01312 Bma02g00056 . . Cmo09g00517 . Cma12g00293 Car01g01191 . . . Bhi09g02366 Tan01g3734 . . . . . . . . . . . . . . Chy03g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000718 2 10 3 4 3 2 4 4 4 1 3 3 4 2 2 4 3 2 4 2 2 2 2 2 2 2 2 5 11 1 97