Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04408 ATGGCGGTCGATCTGATGAGTTTCCCGAAGATGGATGATCAAATCGCTATACAAGAGGCAGCATCGCAAGGTTTGAAGAGTATGGAGCATTTGATTCGTCTTCTTTCTCACAAGCAATCTTCAAACCATGTCGATTGTTCTGACCTAACTGATGCAACCGTTTCCAAGTTCAAGAAAGTCATTTCTCTCCTCAATCGAACCGGTCACGCCAGATTCCGGCGAGGTCCGGTTTCTTCGACTTCCTCATCGTCTTCCGGTTCATCCGCTCATCTCTCTCAAAATCAAGCCATGACTCTCACTCCTACTCCGTTCACTTCACCGCCGAATGTTCCTGCTCTGCCGTTTACCGCTCCGGCCACTGTCGCTCAGCCACAGACAAAAGTCGTTGCCACCGCCGCGAACTTTCTATCTCAGCCTCAGAGTATGACTCTTGATTTCACTAGACCGAATATTCTGAACTCTAACCCTAAGGGAGCCGATTTGGAATTCTCTAAAGAGACCTTCAGTGTCTCTTCGAGCTCATCGTTTATGTCCTCTGCTATCACCGGAGATGGAAGTGTATCTAACGGAAAATTAGGAACGTCGATCTTTTTAGCACCAGCGCCAACTGCTTCCGGCGGTAAGCCTCCGCTCTCGGCGGCACCTTACAAGAAGAGGTGTCACGAACACGATCATTCCGAAGATTTATCCGGGAAATTCTCCGGATCAACATCAATCTCCGGAAAGTGCCATTGCTCGAAGAGAAGAAAAAATCGGATGAAGAAGACCATCCGAGTCCCGGCTATCAGTTCAAAAATCGCCGATATTCCACCGGACGAGTACTCATGGAGGAAGTACGGTCAGAAGCCGATCAAAGGATCTCCATACCCACGGGGGTATTATAAGTGTAGCACGATGAGGGGATGTCCGGCGAGGAAACACGTGGAGAGAGATCCGAACGATCCAGCGATGTTGATTGTAACGTACGAAGGGGAGCATCGCCATACACAGAGCTCATTACCGGAAAATATGGCGGCGGCTGGAGGAGTAGCTTTAGTTTTTGAGTCAAGTTGA 1053 49.1 MAVDLMSFPKMDDQIAIQEAASQGLKSMEHLIRLLSHKQSSNHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPVSSTSSSSSGSSAHLSQNQAMTLTPTPFTSPPNVPALPFTAPATVAQPQTKVVATAANFLSQPQSMTLDFTRPNILNSNPKGADLEFSKETFSVSSSSSFMSSAITGDGSVSNGKLGTSIFLAPAPTASGGKPPLSAAPYKKRCHEHDHSEDLSGKFSGSTSISGKCHCSKRRKNRMKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQSSLPENMAAAGGVALVFESS* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38433423 38436416 - CsaV3_3G047140.1 Csa03g04408 525313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04408 350 Pfam Plant zinc cluster domain 217 268 IPR018872 -
Csa03g04408 350 Gene3D WRKY domain 249 323 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g04408 350 SUPERFAMILY WRKY DNA-binding domain 268 330 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g04408 350 Pfam WRKY DNA -binding domain 272 328 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g04408 350 MobiDBLite consensus disorder prediction 74 103 - -
Csa03g04408 350 ProSiteProfiles WRKY domain profile. 265 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g04408 350 PANTHER WRKY TRANSCRIPTION FACTOR 17-RELATED 7 349 - -
Csa03g04408 350 SMART WRKY_cls 270 330 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g04408 350 MobiDBLite consensus disorder prediction 72 107 - -
Csa03g04408 350 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 7 349 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02192 Csa-Chr1:19017073 Csa03g04408 Csa-Chr3:38433423 4.04E-66 dispersed
Csa03g00861 Csa-Chr3:7225695 Csa03g04408 Csa-Chr3:38433423 3.17E-29 dispersed
Csa03g04408 Csa-Chr3:38433423 Csa06g02959 Csa-Chr6:25618485 2.09E-12 dispersed
Csa03g04408 Csa-Chr3:38433423 Csa04g02431 Csa-Chr4:24478962 1.72E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31427 PF03106 WRKY 6.70E-26 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04408 - - csv:101218039 669.077