Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04413 ATGGAACACAACAAACGCAAATTCGTCAGGTTTTATTCCAATCTGGAGAAAAACGATGGGAATAAGAAGAAGGGTATTGAGTTCCCATTGCCTGTTTTCAAAATGGGGACGAAATTAGAGAGTGAAAGTAAAGTTGATTCTTCGCAAGAACAGAAGAATAAGAGGATACTTAACCCTGAAAGTGAAAGGATTTTGAGATGGAACAGGGTTTTTTTATTCTCTTGTTTGACTGCTCTTTTTGTAGATCCCTTGTTCTTCTACCTTCCTTCAGTGATTCATCATAACAGGTCATCTTGTATGACTACTGATTTCAATTTGGGAATTGTTGTGACTGTTTTTCGTACTTTTGCCGATGTCTTTTATCTGTTGCATATGATTTTGAAGTTCCGCATTGCTTATGTATCACCAACTTCAAGAGTTTTTGGCAAAGGTGAACTTGTTACTGATCCTAAGAAGATTGCTGAACGCTATTTGAAGTCTGATTTCTGTGTAGATCTCATTGCTTCTCTGCCTCTTCCTCAGATTATGATATGGTTTATCATGCCAGCAATTAGAAGCTCTCATGCAGACCATACAAACAATACTCTTGTATTAATTGTCCTGCTTCAGTATATTCCAAGATTTTACCTGATTTTCCCATTAAGTTCCCACATTATCAAAACTACTGGTGTTGTCACAAAGACTGCTTGGGCTGGAGCTGCATATAACCTTGTATTGTATATGCTAGCTAGTCATATCTTAGGAGCAGCATGGTATTTACTATCTGTGGAGCGCCATGCCATGTGCTGGAAGTTCACCTGCAGGAGGGAATTCAGTCCTATGAAATGCCATCTTGACTATTTGGATTGTGGTACTTTAAATGATGTAGACCGCAGGATATGGGAAGTGAATACTACTGTTTTTAGCCAATGTTCTCCAGATGAAGACTTCGTTTTCAATTATGGGATATTTGCGGATGCGATCACAAAAAATGTCATCTCCTCCCGGTTCCTTCAAAAGTATTTCTATTGTTTATGGTGGGGCTTACAGAACTTGAGTTCCTATGGTCAGAGTTTGGAAACAAGCATCTTCATAGGAGAGACTTTGTTTGCTATCCTCATTGCTATAATGGGTTTGGTCTTGTTTGCGCATTTGATCGGAAATATGCAGACCTATTTGCAATCCATCACCGTGAGACTGGAGGAATGGAGGGTGAAGCGTCGAGACACTGAGGAATGGATGAAACATCGACAACTCCCTCAAGATTTACAAGAACGTGTGAGGAGATTTGTTCAATATAAGTGGCTTGCAACACGAGGAGTGGACGAAGAGTCGATCTTACAAGGCCTTCCAACAGATCTCCGTCGAGATATTCAGCGTCACTTGTGCCTCGACCTTGTTCGACGTGTTCCTTTCTTTGCACAAATGGATGGTCAACTACTGGATGCAATTTGCGAGCGACTGGCTTCCTCTCTATGTACACAACGTACTTACATTGTTCGTGAAGGAGATCCTGTTACCGAGATGCTCTTTATCATTCGAGGGATGCTCGAGAGCTCCACAACGGATGGAGGACGATTGGGTTTTTTCAATTCCATAACCTTAAGACCTGGTGATTTTTGCGGTGAAGAGCTTCTCGCTTGGGCATTGCTACCAAAATCATCAATCAGCTTACCGTCTTCTACCAGAACTGTTCGAGCAATCACTGAAGTGGAAGCCTTTGCTCTACGTGCAGAGGATCTCAAATTCGTTGCTAACCAGTTTCGACGACTTCATAGCAAGAAGCTTCAGCATACCTTCCGGTTTTACTCTTATCACTGGAGAACCTGGGCAGCATGCTTCATTCAGGCAGCATGGCGTCGCTTCAAAAGGAGAATCATAGCGAAGTCACTCAGCTTGCAGGAGTCTTTCTCGTTGACTCCCGAGAAGCCAGTGGCCGAGGAAGCTGAACAAGAAGAGGAAGGACATAGTACCCCACGCTCAAGTTACTCTCAAGCAAAACAAAACCTTGGTGTCACCATATTGGCTTCAAGGTTTGCTGCAAACACACGTAGAGGAGCACAAAAGCTCAAGGATGTTAACTTATCCAAACTTCGAAAGCCCGATGAGCCTGACTTTTCTGAAGAACCAGATGATTAA 2118 42.4 MEHNKRKFVRFYSNLEKNDGNKKKGIEFPLPVFKMGTKLESESKVDSSQEQKNKRILNPESERILRWNRVFLFSCLTALFVDPLFFYLPSVIHHNRSSCMTTDFNLGIVVTVFRTFADVFYLLHMILKFRIAYVSPTSRVFGKGELVTDPKKIAERYLKSDFCVDLIASLPLPQIMIWFIMPAIRSSHADHTNNTLVLIVLLQYIPRFYLIFPLSSHIIKTTGVVTKTAWAGAAYNLVLYMLASHILGAAWYLLSVERHAMCWKFTCRREFSPMKCHLDYLDCGTLNDVDRRIWEVNTTVFSQCSPDEDFVFNYGIFADAITKNVISSRFLQKYFYCLWWGLQNLSSYGQSLETSIFIGETLFAILIAIMGLVLFAHLIGNMQTYLQSITVRLEEWRVKRRDTEEWMKHRQLPQDLQERVRRFVQYKWLATRGVDEESILQGLPTDLRRDIQRHLCLDLVRRVPFFAQMDGQLLDAICERLASSLCTQRTYIVREGDPVTEMLFIIRGMLESSTTDGGRLGFFNSITLRPGDFCGEELLAWALLPKSSISLPSSTRTVRAITEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKRRIIAKSLSLQESFSLTPEKPVAEEAEQEEEGHSTPRSSYSQAKQNLGVTILASRFAANTRRGAQKLKDVNLSKLRKPDEPDFSEEPDD* 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38472710 38477560 + CsaV3_3G047190.1 Csa03g04413 525318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04413 705 Gene3D Helix hairpin bin 393 456 - -
Csa03g04413 705 Gene3D - 66 391 - -
Csa03g04413 705 SUPERFAMILY cAMP-binding domain-like 395 587 IPR018490 -
Csa03g04413 705 Pfam Ion transport protein 67 392 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Csa03g04413 705 MobiDBLite consensus disorder prediction 635 658 - -
Csa03g04413 705 SUPERFAMILY Voltage-gated potassium channels 63 387 - -
Csa03g04413 705 Gene3D Jelly Rolls 463 583 IPR014710 -
Csa03g04413 705 Pfam Cyclic nucleotide-binding domain 489 576 IPR000595 -
Csa03g04413 705 ProSiteProfiles cAMP/cGMP binding motif profile. 465 595 IPR000595 -
Csa03g04413 705 MobiDBLite consensus disorder prediction 683 705 - -
Csa03g04413 705 SMART cnmp_10 465 596 IPR000595 -
Csa03g04413 705 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 37 702 - -
Csa03g04413 705 MobiDBLite consensus disorder prediction 683 698 - -
Csa03g04413 705 CDD CAP_ED 465 596 IPR000595 -
Csa03g04413 705 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 37 702 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01942 Csa-Chr1:16308637 Csa03g04413 Csa-Chr3:38472710 0 dispersed
Csa03g04413 Csa-Chr3:38472710 Csa06g01202 Csa-Chr6:10197240 0 dispersed
Csa03g04413 Csa-Chr3:38472710 Csa03g03918 Csa-Chr3:34344343 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04413 K05391 - csv:101211072 1377.46