Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04417 ATGTGGTTACCAAGATATAGCTTAGAAAGAAAAGAGAGACTGAATGTAAATGGAATTGTGGCAGTGGCAATTGACAAAGATAAAGGAAGCCAAGGAGCTCTCAAATGGGCAATCGATCATTTGCTTCAAAGAGGACATACTGTTTTCCTCATGCATGTCAAACTCAAATCTCCTTCTAATTCTACCCAAAAGATGAAATCTGACCCAGAAGCCAATGTTAAAGATTTATTCCTTCCTTTTCGATGCTTTTGTACTCGAAAAGATATTCAATGCAAAGATATTGTGTTGGAAGATACAGATGTAGCAAAGGCCATAATTGAATATGCTGCAAATACAACCATAGAGAATATTGTTGTGGGTGCTTCAGCCAGATCTGGCTTCTTAAGATTCAAGGTAACTGATATTCCTGGCAGTATAGTAAAAGGAGCACCAGATTTTTGTAATGTGTTTGTCATTTCTAAAGGCAAAATTCAAACGATGCGTTCGGCATCTCGTCCTGCTCCAACGGTTAGTGCTCTACGAGGTCCATTAGCACAACAAAGCAGCAAAAAATTATCCGATACGCCCGACTTCCCTGTCTCTCACTCTGCAACTGCAAGAGTGTCTTTGGATAAGCCACCTCTTGATCTGCCTAATAAATCGCAAGACGAAGCCGATTACATGAGGTCTCCATTCACAAGGAAAGGATATAATTACAAACCATCATATGGAGATTTGCCGATGCAAGATTCAGATATATCTTTCGTTAGCTCGGGAAGACCGAGCATCGATCGTATATTTCCGACCCTTTATGAGAGTCAAGATATGGGAGGAAGAGCCACACCACCACAGATATCAAGCAGTACAGATCTTGACTTGACTCGCAGCTTTGAGTCTCTGCAGTTGGGACGAATGTCGGTCGATATGAACTTTCCGTCTGAGTTCTCTTCGATCTCGCAAGACAGCGATAGATTGTCTATCTCATCACAGTCTATGGAAGACGTAGAGGCCGAGATGCGTAGACTGAAGCTAGAACTCAAGCAAACCATGGAAATGTACAGCACAGCCTGCAAGGAAGCTCTTACAGCAAAACAAAAGGCGGTTGAGCTACAACGCTGGAAATTGGAAGAAGAACAAAGATTAGAAGAGGCGAGATTGGCGGGGGAAGCTGCATTGGCATTAGCCGAACAAGAGAAGGCCAAGTCGAAAGCAGCCGTGGAAGCCGCTGAAGCAGCTAGAAGAATTGCAGAATTAGAAGCACAGAAAAGAATGAAGGCTGAAATGAAAGCACTCAAAGAAGCTGAAGAGAAGAAAAAAGCATATGATGCATTGGCACAAACTGATAATATCAGGTATAGAAAGTATACGATCGAGGAGATCGAAGCGGCAACAGAATTCTTCTCCGAGTCTCGTAGGATTGGAGAAGGAGGGTATGGTCCTGTTTACAAGTGTGATCTTGATCATACTCCTGTTGCTATTAAGGTTCTACGGCCGGATGCGACTCAAGGACGATCACAGTTTAAACAAGAGGTAGAAGTACTCAGCTGTATACGCCATCCAAACATGGTTCTCCTCCTTGGAGCTTGCCCCGAGTACGGCTGCTTGGTGTATGAGTTCATGGCTAATGGAAGCTTAGAAGATCGGCTTCTACGACGAGGAAACACACCTGCACTTTCGTGGCAACTAAGGTTTAAAATTGCAGCTGAAATTGGAACAGCATTGTTGTTCTTGCACCAAACAAAGCCAGAGCCTCTCGTGCATCGTGATCTGAAACCAGCTAACATCCTTCTCGATCGTAACTTTGTCAGTAAGATCAGTGATGTTGGGTTGGCTCGGCTTGTACCACCATCGATTGCCGATAGCGTAACACAATACCGAATGACATCAACTGCTGGTACATTTTGCTACATTGATCCAGAGTATCAACAAACAGGTATGCTCGGTGTGAAATCCGACATATACTCACTAGGCATCATGTTTCTCCAATTGATAACTTCTAGGCCACCAATGGGGTTGACTCACCATGTCGAAAGATCTATCGAGAAGGGTATGTTCGATACTATTCTCGATCCCATCATCACCGATTGGCCTATTGAAGAAGCTTTGTCTTTTGCAAAGTTGTCGCTCAAATGTGCTGAGTTAAGACGTAAAGACAGGCCGGATCTTGGGAAGGTTATCCTTCCTGAGCTTAACAGGTTGAGAGCTATTGCAGAAGATACAATGCATCCAACACTGATGGGAGACACAAGCCCTTCTCGCAGCAGCAGCCAAGTTTCTTTTCACTTGGGAGCAATGGCTTCATCTCCACAATCATACAACAGCTCGAGAAATCCATCGGCTAATTTTTGA 2328 43.77 MWLPRYSLERKERLNVNGIVAVAIDKDKGSQGALKWAIDHLLQRGHTVFLMHVKLKSPSNSTQKMKSDPEANVKDLFLPFRCFCTRKDIQCKDIVLEDTDVAKAIIEYAANTTIENIVVGASARSGFLRFKVTDIPGSIVKGAPDFCNVFVISKGKIQTMRSASRPAPTVSALRGPLAQQSSKKLSDTPDFPVSHSATARVSLDKPPLDLPNKSQDEADYMRSPFTRKGYNYKPSYGDLPMQDSDISFVSSGRPSIDRIFPTLYESQDMGGRATPPQISSSTDLDLTRSFESLQLGRMSVDMNFPSEFSSISQDSDRLSISSQSMEDVEAEMRRLKLELKQTMEMYSTACKEALTAKQKAVELQRWKLEEEQRLEEARLAGEAALALAEQEKAKSKAAVEAAEAARRIAELEAQKRMKAEMKALKEAEEKKKAYDALAQTDNIRYRKYTIEEIEAATEFFSESRRIGEGGYGPVYKCDLDHTPVAIKVLRPDATQGRSQFKQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMANGSLEDRLLRRGNTPALSWQLRFKIAAEIGTALLFLHQTKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSIADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITSRPPMGLTHHVERSIEKGMFDTILDPIITDWPIEEALSFAKLSLKCAELRRKDRPDLGKVILPELNRLRAIAEDTMHPTLMGDTSPSRSSSQVSFHLGAMASSPQSYNSSRNPSANF* 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38540278 38545712 - CsaV3_3G047230.1 Csa03g04417 525322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04417 775 Coils Coil 351 371 - -
Csa03g04417 775 MobiDBLite consensus disorder prediction 174 195 - -
Csa03g04417 775 Gene3D HUPs 9 152 IPR014729 -
Csa03g04417 775 PANTHER OS02G0152300 PROTEIN 12 772 - -
Csa03g04417 775 MobiDBLite consensus disorder prediction 163 198 - -
Csa03g04417 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 578 590 IPR008271 GO:0004672|GO:0006468
Csa03g04417 775 Coils Coil 385 437 - -
Csa03g04417 775 SMART serkin_6 460 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04417 775 CDD STK_N 19 155 - -
Csa03g04417 775 Pfam Universal stress protein family 20 144 IPR006016 -
Csa03g04417 775 Coils Coil 318 345 - -
Csa03g04417 775 ProSiteProfiles Protein kinase domain profile. 460 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04417 775 Gene3D Phosphorylase Kinase; domain 1 438 532 - -
Csa03g04417 775 Pfam Protein kinase domain 461 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04417 775 Gene3D Transferase(Phosphotransferase) domain 1 533 738 - -
Csa03g04417 775 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 152 - -
Csa03g04417 775 SUPERFAMILY Protein kinase-like (PK-like) 443 718 IPR011009 -
Csa03g04417 775 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34-LIKE 12 772 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04417 Csa-Chr3:38540278 Csa06g01490 Csa-Chr6:12600999 1.64E-74 dispersed
Csa02g00037 Csa-Chr2:323957 Csa03g04417 Csa-Chr3:38540278 1.57E-10 transposed
Csa02g00700 Csa-Chr2:5664089 Csa03g04417 Csa-Chr3:38540278 0 transposed
Csa05g00483 Csa-Chr5:3136618 Csa03g04417 Csa-Chr3:38540278 1.38E-130 transposed
Csa06g02026 Csa-Chr6:18198203 Csa03g04417 Csa-Chr3:38540278 0 transposed
Csa07g00067 Csa-Chr7:683039 Csa03g04417 Csa-Chr3:38540278 0 transposed
Csa07g02376 Csa-Chr7:21915512 Csa03g04417 Csa-Chr3:38540278 0 transposed
Csa02g02310 Csa-Chr2:20598002 Csa03g04417 Csa-Chr3:38540278 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78096 PF00069 Pkinase 3.00E-39 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04417 - - csv:105435028 1414.44