Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04418 ATGGCTCATAAAGTAGATCTGCTTTTACTGATCTTATTTCTAGTCTGGTGCTGTAACACCTCCTCTAGTACCAGTCCCGAGGCCGAAATTCTCATCAAGTTCAAGAGCTCTCTTTCACACAACCCTGCCTTGGACAATTGGAACGTGTCCATCAACATCTGTGACGATGATGCAAAAACTAAAGGTTTCTGGACTGGTGTGACTTGTAAAGATGGAGCTCTGTTTGGGTTACGGCTAGAGAACATGAGCTTAAGTGGGTTTATCGACATAGACGTGCTCATGAACTTGACATCTCTAAGAAGCTTAAGCTTCATGAACAATAGCTTTCATGGTTCGATGCCTCCTGTTAGGAAACTGGGAGCATTAAGAGCTTTATATCTTGCATACAACAAATTCTCTGGTACAATACCTGATGATGCTTTTCAAGATATGAGGTCTCTGAAAACGGTGCGTTTAGAAGAGAATGCGTTCAAAGGAGGAATTCCAAGTTCCCTTTCTAGTTTGCCAGCATTAGTGGAATTAAGCCTTGAAGGGAATAGATTTGAAGGCAGAATCCCTGATTTTATACCAAGGGATTGGAAGTTGTTTGATTTGTCCAATAACCAATTGGAGGGTTCAATCCCTTCTGGCTTAGCCAATATCGACCCCATTGCTTTTGCAGAAATCAATAGCGTCGTATTATTTGATAATGGGAGCTCACTAAAATTTAATTTCAAATCAAAACCACATGTGGCCAAACAGATAACTAAGATGAAAATCCATCTGTCTCCCATAGGGAATAACGAGTTATGTGGAAAACCACTTAGCCGATGCAAATCTCCAAAGAAGTGGTACATCCTCATAGGAGTCACCGTCGGAATCATCTTCTTAGCGATCGCTGTCATTTCCCATCGCTACCGCCGCCGCAAGGCTTTACTATTAGCAGCGGAAGAAGCCCACAACAAATTGGGCCTGTCAAAGGTCCAATATCAAGAACAAACAGAAGAAAACGCGAAGCTCCAATTTGTTCGGGCCGACAGGCCCATATTTGACTTAGAGGAGCTGTTGACGGCCCCAGCAGAAGTATTGGGCGGTGGAAGTTTTGGGTCATCTTATAAGGCCCTACTTTCAAATGGGCCTCCGGTGATTGTGAAAAGGCTTCGGCCCATGAGATGTGTTGGGTTCGAGGAGTTTCATGAGCATATGAAAAAACTTGGCTCAATTTCACATACTAATTTGCTTCCTCCTCTGGCTTTCTATTATAGAAATGAAGATAAGCTTCTGATTTCGGAGTTCGTGGGGAATGGGAACTTAGCTGATCATCTTCATGGCCAAGCTCAGCGTACGCCTGGAAATATTGGGCTGGACTGGCCAACGCGGTTACGGATCATAAAAGGAGTGGGGCGAGGGCTGGCCCATTTACATAGAGCATTACCGAGCCTGAGCCTACCACACGGCCACTTAAAATCCTCCAACATTCTTCTTAACAGCAACTACGAGCCTCTATTAACCGACTTCGGCCTGGATCCTCTAGTTTGCCATGACCAAGGCCATCAATTCATGGCAGCCTACAAGTCGCCGGAGTACATCCGGCACCGCCGAGTCTCCAGAAAGACCGACGTGTGGAGCCTCGGAATTCTGATCCTGGAGCTTCTGACAGGGAAGTTTCCGGCGAACTATCTGAGGCAGGGAGGAGGTACGGGGAACGGAGACCTGGCGGCGTGGGTGAAGTCGGCGGTGAGGGAGGAGTGGACGGCGGAGGTATTCGATGGGGATATGATGAAGGGAACGAAGAACGAAGACGGGGAAATGGTGCGTTTGTTAAGGATAGGAATGAATTGCAGTGAAGAGGAGGAAGATCAACGGTGGGGATTGAAGGAGGCGGTGGAGAAGATTGAGGAATTGAAGGAGACAGAAATTTCTACTGATGATGAATTTTATTCGTCTTATGGTAGTGAAGTTGAAGTTAGATCTGTAGGGAGAGAATAG 1968 46.04 MAHKVDLLLLILFLVWCCNTSSSTSPEAEILIKFKSSLSHNPALDNWNVSINICDDDAKTKGFWTGVTCKDGALFGLRLENMSLSGFIDIDVLMNLTSLRSLSFMNNSFHGSMPPVRKLGALRALYLAYNKFSGTIPDDAFQDMRSLKTVRLEENAFKGGIPSSLSSLPALVELSLEGNRFEGRIPDFIPRDWKLFDLSNNQLEGSIPSGLANIDPIAFAEINSVVLFDNGSSLKFNFKSKPHVAKQITKMKIHLSPIGNNELCGKPLSRCKSPKKWYILIGVTVGIIFLAIAVISHRYRRRKALLLAAEEAHNKLGLSKVQYQEQTEENAKLQFVRADRPIFDLEELLTAPAEVLGGGSFGSSYKALLSNGPPVIVKRLRPMRCVGFEEFHEHMKKLGSISHTNLLPPLAFYYRNEDKLLISEFVGNGNLADHLHGQAQRTPGNIGLDWPTRLRIIKGVGRGLAHLHRALPSLSLPHGHLKSSNILLNSNYEPLLTDFGLDPLVCHDQGHQFMAAYKSPEYIRHRRVSRKTDVWSLGILILELLTGKFPANYLRQGGGTGNGDLAAWVKSAVREEWTAEVFDGDMMKGTKNEDGEMVRLLRIGMNCSEEEEDQRWGLKEAVEKIEELKETEISTDDEFYSSYGSEVEVRSVGRE* 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38547001 38550790 - CsaV3_3G047240.1 Csa03g04418 525323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04418 655 ProSiteProfiles Protein kinase domain profile. 350 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04418 655 Pfam Leucine rich repeat N-terminal domain 26 69 IPR013210 -
Csa03g04418 655 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Csa03g04418 655 Gene3D Phosphorylase Kinase; domain 1 316 425 - -
Csa03g04418 655 PANTHER LRR RECEPTOR-LIKE KINASE 6 220 - -
Csa03g04418 655 PANTHER LRR RECEPTOR-LIKE KINASE 245 636 - -
Csa03g04418 655 Pfam Protein tyrosine and serine/threonine kinase 354 624 IPR001245 GO:0004672|GO:0006468
Csa03g04418 655 Coils Coil 618 638 - -
Csa03g04418 655 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 245 636 - -
Csa03g04418 655 SUPERFAMILY L domain-like 27 217 - -
Csa03g04418 655 Gene3D Transferase(Phosphotransferase) domain 1 426 647 - -
Csa03g04418 655 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 6 220 - -
Csa03g04418 655 SUPERFAMILY Protein kinase-like (PK-like) 354 628 IPR011009 -
Csa03g04418 655 Gene3D Ribonuclease Inhibitor 24 272 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00459 Csa-Chr1:2909428 Csa03g04418 Csa-Chr3:38547001 0 dispersed
Csa03g04418 Csa-Chr3:38547001 Csa04g01851 Csa-Chr4:18200725 9.44E-116 dispersed
Csa02g02307 Csa-Chr2:20577187 Csa03g04418 Csa-Chr3:38547001 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78097 PF07714 PK_Tyr_Ser-Thr 2.20E-25 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04418 - - csv:101210337 1210.67