Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g04424 | ATGGATTCAAATGCAAAGAAGTCCAACAAAATCAGAGACATCGTACGGCTTCAACAGATCCTGAAGAAATGGCGGAAGCTAGCAAACTCATCGAAGACGGCGAATAAAATCACGGGCACGGCGGCGGGACCTGCCGGAAAGAGCATAAAGTTTCTGAAACGGACTTTATCGTCGGCTGGCGGGGAAGTGCCGAAAGGGTATTTGGCAGTGAGTGTAGGGGAAGAGCAAAAGCGATTTGTTATACCGACGTCGTATTTAGGGCATCCGGCGTTTGAGATTCTGTTGAGAGAAGCGGAGGAGGAATTTGGGTTTCAACAAACGGGGGTTTTGAGGTTGCCGTGTGAAGTATTTGTGTTTGAAAATGTGGTGAAATTGGTGGAGGAAAAGAAGAAAGGGGATTTGTTGTTAGGAGGGGAAGAGGCTTAA | 426 | 47.42 | MDSNAKKSNKIRDIVRLQQILKKWRKLANSSKTANKITGTAAGPAGKSIKFLKRTLSSAGGEVPKGYLAVSVGEEQKRFVIPTSYLGHPAFEILLREAEEEFGFQQTGVLRLPCEVFVFENVVKLVEEKKKGDLLLGGEEA* | 142 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 38599462 | 38602425 | - | CsaV3_3G047300.1 | Csa03g04424 | 525329 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g04424 | 141 | Pfam | Auxin responsive protein | 23 | 125 | IPR003676 | GO:0009733 | |
Csa03g04424 | 141 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 7 | 131 | IPR003676 | GO:0009733 | |
Csa03g04424 | 141 | PANTHER | SAUR FAMILY PROTEIN | 7 | 131 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00983 | Csa-Chr1:6097228 | Csa03g04424 | Csa-Chr3:38599462 | 9.27E-19 | dispersed | |
Csa02g01321 | Csa-Chr2:12856450 | Csa03g04424 | Csa-Chr3:38599462 | 2.88E-25 | dispersed | |
Csa03g00773 | Csa-Chr3:6767214 | Csa03g04424 | Csa-Chr3:38599462 | 1.06E-19 | dispersed | |
Csa03g04424 | Csa-Chr3:38599462 | Csa07g02273 | Csa-Chr7:21174391 | 3.56E-41 | dispersed | |
Csa07g00148 | Csa-Chr7:1279484 | Csa03g04424 | Csa-Chr3:38599462 | 6.92E-10 | dispersed | |
Csa03g04424 | Csa-Chr3:38599462 | Csa07g00056 | Csa-Chr7:620914 | 2.99E-27 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g04424 | K14488 | - | csv:101216710 | 239.965 |