Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04424 ATGGATTCAAATGCAAAGAAGTCCAACAAAATCAGAGACATCGTACGGCTTCAACAGATCCTGAAGAAATGGCGGAAGCTAGCAAACTCATCGAAGACGGCGAATAAAATCACGGGCACGGCGGCGGGACCTGCCGGAAAGAGCATAAAGTTTCTGAAACGGACTTTATCGTCGGCTGGCGGGGAAGTGCCGAAAGGGTATTTGGCAGTGAGTGTAGGGGAAGAGCAAAAGCGATTTGTTATACCGACGTCGTATTTAGGGCATCCGGCGTTTGAGATTCTGTTGAGAGAAGCGGAGGAGGAATTTGGGTTTCAACAAACGGGGGTTTTGAGGTTGCCGTGTGAAGTATTTGTGTTTGAAAATGTGGTGAAATTGGTGGAGGAAAAGAAGAAAGGGGATTTGTTGTTAGGAGGGGAAGAGGCTTAA 426 47.42 MDSNAKKSNKIRDIVRLQQILKKWRKLANSSKTANKITGTAAGPAGKSIKFLKRTLSSAGGEVPKGYLAVSVGEEQKRFVIPTSYLGHPAFEILLREAEEEFGFQQTGVLRLPCEVFVFENVVKLVEEKKKGDLLLGGEEA* 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38599462 38602425 - CsaV3_3G047300.1 Csa03g04424 525329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04424 141 Pfam Auxin responsive protein 23 125 IPR003676 GO:0009733
Csa03g04424 141 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 131 IPR003676 GO:0009733
Csa03g04424 141 PANTHER SAUR FAMILY PROTEIN 7 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00983 Csa-Chr1:6097228 Csa03g04424 Csa-Chr3:38599462 9.27E-19 dispersed
Csa02g01321 Csa-Chr2:12856450 Csa03g04424 Csa-Chr3:38599462 2.88E-25 dispersed
Csa03g00773 Csa-Chr3:6767214 Csa03g04424 Csa-Chr3:38599462 1.06E-19 dispersed
Csa03g04424 Csa-Chr3:38599462 Csa07g02273 Csa-Chr7:21174391 3.56E-41 dispersed
Csa07g00148 Csa-Chr7:1279484 Csa03g04424 Csa-Chr3:38599462 6.92E-10 dispersed
Csa03g04424 Csa-Chr3:38599462 Csa07g00056 Csa-Chr7:620914 2.99E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04424 K14488 - csv:101216710 239.965