Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04428 ATGGAGTCTCGTTTTTCACTTCTACTTCTTCTACTTATCTCCCTTGGAATTGTTTGTAGTTATGCTGTTGCTGCTGCTGATGATATCCACGTCTCCCCTCAACAGTATTGGGATTCTGCCTTGCCAAACACTCCTATCCCCAAAGCTATTGAAAGTCTCCTTGGTTCGGATTTTGTGGAAGGAAAAAGCACTTCGGTGAATGTTGGTAAAGGGGGCGTAAACGTCAACACCGGAAAAGGTAAGCCTAAAGGCACCTCCGTTAACGTCGGAAAAGGCGGAGTTAACGTCAACGCTCCAAAACCAAAGCAAGGAGGCACTAGCGTTAACGTCGGTAATGGAGGCGTTAACGTCCACACCGGTCGAAAAGGTAAACCGATTTATGTTGGAGTTAAACCGGGCTCCAGTCCCTTTGTTTATAAATACGCAGCCACAGAAACCCAAGTTCACGATGACCCAAATACAGTCCTTTTCTTTCTTGAAAAAGATCTCCACCCTAGGTCTAAATTCACCCTTCATTTCCCTAAACAAACAACAACAACAACTAAGTTCTTGCCACGTCGTGTTGCCAAATCACTCCCTTTCTCTTCCCAAAAACTGCCCCAAATCCTCACCCACTTCTCCATTCCTCCCACAAGTCTCGAAGCTGAGTCGATTCGAAACACGATTGACCAATGCGAAGCACCTGGCATTGTCAGTGAAGATAAGTTCTGCGCTACGTCGTTGGAGTCCATGGTTGATTTCAGTACTTCTAAGATGGGAAAGAAGGTGACATTGGTCTCGACAGAAGTCGAGAAAGATACAAATTTGCAAGCGTTTACTGTTGTAAATTTGACGAAGAAATCATCAGTAACAGACTCTGCAGTTGCGTGTCATAAGTTGAGCTATCCATATGCAGTGTTTTATTGTCATTACGCACAACACACCCGTGTTTACAAGGTTAGCTTGTTGGGTGCCGATGGAACTAAAGCTGACGTGGCAGCCGTGTGTCACACCGACACGTCAGATTGGAATCCAAAGCATTTGGCTTTTCAGGTGTTGAAGGTGAAGCCAGGGACAGTTCCAGTTTGCCATTTTCTTCCAGAAGACCATGTTCTGCAATTCTTATTGGAGGAGGCTTGCTTTGGTATTATGGTAGAAACAGAGCAAGTGGAGAACGTTGAATTTCAATGGGGCAAAAAGAAAGGAATTGGTGGGAAGAAGAAGGACGTGACCTTTTATGAATCTTTTACTTACGATGGTGTAGAATATTTTCTTTATGACTCTGTCTACCTATATAAGGAAGGTGAACCAGAGCCTTACATTGGTAAACTTCTTAAAATCTGGCAGAATCCTGATAAGACAAAGAAAGTAAAAATTCTTTGGTTTTTTCGATCTTGTGAGATTCTTAATTATCTTGGAGGTGTAGACACACGGGAGAATGAATTATTTTTGGCATCCGGCAATGGTATTGGTCTTGCCAATATTAATTCTCTGGAAGTACTTGCTGGAAAGTGCAACGTTCTCTGCATTTCAAATGACAGCAGAAATCCACAACCTTCTGATGAAGCACTCAAAAAGGCTGATTTTGTATTTTGTCGTACATTTGATGTTGGAAAACAAGAGGTCTGCAATGAGATATGTGATAAAATTGCTGGAGTGGAAGTTAAACTTTTACTTAATAAAGCAGATTCGTCAAAAGATGTTAAGAGGACCGATAAGGATGGGAAAGATGCAAGTGGCATTGCAATTGTAAATACTCAATTAGAAGATCCTTCTGGAAGGGACATTTCTAATGGAGAATTGACTCTGACGACTAATGACAGCTCTCTTGAGAAGTCCACAAAGGAAAATGTTGATTTGAAGGGTTCTATAGAGAAATCCTCCAATGAGGAAAAGTCGAGTGCACATGCAATCGAAAGAGGAATTGGAATGGGTAAAACTAGTAGTATTATTAAACATGAAAACATCTTAGGTGATAAGGTCCCTCCAAAGCTCAAAATTGATTCTAATGAGAAGCCTGGTAATGCTAAGGATGTCGAAGGTAGAGTTAAAAGTCTAAGGGAATCTGCTGAAGTTGAACATAGGCCAGCAAAGAAGACAAAACTCGATAGCTCTGTTCAGTTATCTCCTGGAAAGACCGAGAATGACATTGAAAAGCTTGGTGTTGATCACAACAATGGTGACACACTGGCTTCCTCACCTAAGGCTCTTGTTTCTGAAGATGCTTCCAGAGCCAAAAATGTAAAAGATTCTCATGAAACCAAAGGTAGCTTTTTAAAGAAGCCCAAGCTAGATGAGAAGCCAACAAAGGTTTCTAATGGCAAGAACCTAAAGGCCTCTTCCCTAATACACGGTGAAGTTGTGGAAGTTACTAGAAGGCCAGATGCTGATAGAAGCAGATGGTTCAAGGGACTTCCGTGGGAAGAAAGAATAAAAGATGCACATGAGCAAGGAACACTTGTTCTAATTCAGAATTTGGATCCATCTTACACTTCCGGTGAAGTGGAGGATATTGTCTGGCATGCCTTCAATGAGAGTTGCACAGCTAAGATGATTCAGAAAACTGCAAATTCTATGCCTCACATAGGTCAAGCTTATGTTGTATTCAAAACCAAGGAAGCAGCAGAGAAAGTGGTCAGAAAATTACACGAAGGTTGCTTATTACTTGCAAATGGAAGCGTTCTTGTTGGTAGCTTTGAGACTCCTCATCTTTCGTCAAAGAAACAAACTTTCTTCGGGCATCACTGTATCGATAAGCTTAGACATCAAATGCAACGTGAGATGAAAGGAGCTGTATCAACTTCGCATTGTTCTCAGCCAAATACAATAGAATATGACATGGCCATGGAATGGTGTTTACTACAAGAAAGATCAGAACTTGTCGGCAAACAGTTGTTCAAGATGAGCTCCATTCTCCAATACTTTCAATTGGGCGAGAATGCTTTCGATGTAGCATATTTTGAATCAAGGGAGTGCCTTACTCTTGCAAGTACCGGAAACGATAGAATTACTTCTCTTGCTTTTTGCACTTTGTCAAAGTGGAGTAATCGGCGATTGTACATTGCTGCATGTGGCGACATGGTTAGTTATATCATTACTTACTGCTTCATGGGAATGAAATGGCGAAATTCACGTAGTCAAAGTATCAGATTGGGACAGAGCTGTGTTTCTTCAAATGAACAAGAAAGCAAAAGATTGGGATGGCAAATTTTGTGGAGAAAGTTGAAGAAGGAGAAGAGAAAAATGTTCAGTTGTTCTTCTGTTGAATTGCGTTCTTCTTATAATCCAAATGCTTATCACTTAAATTTTGATGAAGAAAATTGGGATTCTGAGCCTGATAATCTTTCCAGATCTTTCTCTGCTCGTTTTGCTGATCCTTCAATTGTTTCAAGAAACTTGAGATTGTTGGATTGA 3393 40.97 MESRFSLLLLLLISLGIVCSYAVAAADDIHVSPQQYWDSALPNTPIPKAIESLLGSDFVEGKSTSVNVGKGGVNVNTGKGKPKGTSVNVGKGGVNVNAPKPKQGGTSVNVGNGGVNVHTGRKGKPIYVGVKPGSSPFVYKYAATETQVHDDPNTVLFFLEKDLHPRSKFTLHFPKQTTTTTKFLPRRVAKSLPFSSQKLPQILTHFSIPPTSLEAESIRNTIDQCEAPGIVSEDKFCATSLESMVDFSTSKMGKKVTLVSTEVEKDTNLQAFTVVNLTKKSSVTDSAVACHKLSYPYAVFYCHYAQHTRVYKVSLLGADGTKADVAAVCHTDTSDWNPKHLAFQVLKVKPGTVPVCHFLPEDHVLQFLLEEACFGIMVETEQVENVEFQWGKKKGIGGKKKDVTFYESFTYDGVEYFLYDSVYLYKEGEPEPYIGKLLKIWQNPDKTKKVKILWFFRSCEILNYLGGVDTRENELFLASGNGIGLANINSLEVLAGKCNVLCISNDSRNPQPSDEALKKADFVFCRTFDVGKQEVCNEICDKIAGVEVKLLLNKADSSKDVKRTDKDGKDASGIAIVNTQLEDPSGRDISNGELTLTTNDSSLEKSTKENVDLKGSIEKSSNEEKSSAHAIERGIGMGKTSSIIKHENILGDKVPPKLKIDSNEKPGNAKDVEGRVKSLRESAEVEHRPAKKTKLDSSVQLSPGKTENDIEKLGVDHNNGDTLASSPKALVSEDASRAKNVKDSHETKGSFLKKPKLDEKPTKVSNGKNLKASSLIHGEVVEVTRRPDADRSRWFKGLPWEERIKDAHEQGTLVLIQNLDPSYTSGEVEDIVWHAFNESCTAKMIQKTANSMPHIGQAYVVFKTKEAAEKVVRKLHEGCLLLANGSVLVGSFETPHLSSKKQTFFGHHCIDKLRHQMQREMKGAVSTSHCSQPNTIEYDMAMEWCLLQERSELVGKQLFKMSSILQYFQLGENAFDVAYFESRECLTLASTGNDRITSLAFCTLSKWSNRRLYIAACGDMVSYIITYCFMGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVELRSSYNPNAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD* 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38649239 38666353 - CsaV3_3G047340.1 Csa03g04428 525333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04428 1130 CDD RRM_SF 814 876 - -
Csa03g04428 1130 MobiDBLite consensus disorder prediction 583 604 - -
Csa03g04428 1130 ProSiteProfiles BURP domain profile. 157 369 IPR004873 -
Csa03g04428 1130 MobiDBLite consensus disorder prediction 735 765 - -
Csa03g04428 1130 SMART BURP_2 155 369 IPR004873 -
Csa03g04428 1130 MobiDBLite consensus disorder prediction 654 694 - -
Csa03g04428 1130 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 814 877 IPR000504 GO:0003723
Csa03g04428 1130 MobiDBLite consensus disorder prediction 100 114 - -
Csa03g04428 1130 ProSiteProfiles BAH domain profile. 414 539 IPR001025 GO:0003682
Csa03g04428 1130 Pfam BURP domain 156 365 IPR004873 -
Csa03g04428 1130 Gene3D - 384 535 IPR043151 -
Csa03g04428 1130 SUPERFAMILY RNA-binding domain, RBD 804 881 IPR035979 GO:0003676
Csa03g04428 1130 Gene3D - 800 896 IPR012677 -
Csa03g04428 1130 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 812 895 IPR000504 GO:0003723
Csa03g04428 1130 MobiDBLite consensus disorder prediction 575 639 - -
Csa03g04428 1130 PANTHER PROTEIN ANTI-SILENCING 1 377 961 - -
Csa03g04428 1130 Coils Coil 603 623 - -
Csa03g04428 1130 MobiDBLite consensus disorder prediction 605 630 - -
Csa03g04428 1130 MobiDBLite consensus disorder prediction 70 116 - -
Csa03g04428 1130 MobiDBLite consensus disorder prediction 654 766 - -
Csa03g04428 1130 PANTHER PROTEIN ANTI-SILENCING 1 377 961 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04428 - - - csv:101208860 1157.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02049 Csa-Chr1:17490201 Csa03g04428 Csa-Chr3:38649239 1.01E-12 dispersed
Csa02g01244 Csa-Chr2:12185682 Csa03g04428 Csa-Chr3:38649239 1.36E-38 dispersed
Csa02g01739 Csa-Chr2:17045750 Csa03g04428 Csa-Chr3:38649239 3.47E-29 dispersed
Csa03g02402 Csa-Chr3:22020016 Csa03g04428 Csa-Chr3:38649239 5.42E-07 dispersed
Csa03g04428 Csa-Chr3:38649239 Csa07g01255 Csa-Chr7:12489979 1.11E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g345 . . . . . . . Bma01g02488 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04428 . . . . . . . . . . . . . Cma09g00548 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004249 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 43