Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04435 ATGCAGTTGGAGCTGGGAAAACCACTGCAGAATCGGAAAACGGAGAAGCGTGTTAATGGTATATTCTGGATTATTCTTCTCAACATTGGAATATATGTGGCTGATCACGTTTTTCAGGTTCGTAATATAGGAGCTTTGTACCTGTATCACAGTCGTCCTGCTTGGTATCAATTTTTTACAGCAACATTTTGTCACGCTAATTGGAACCATCTCTCTAGCAATCTTTTTTTCTTGTATATATTTGGGAAACTTGTTGAAGAAGAGGAAGGAAACTTTGCTTTGTGGCTTTCCTATATTCTTACTGGTGTAGGTGCAAACATTGTTTCATGGCTAATTTTACCAAGAAATGCTGTTTCAGTTGGAGCTTCAGGTGCTGTTTTCGGTTTGTTTACCATAAGTGTTCTTGTAAAGATGTCTTGGGATTGGAGGAAGATACTTGAAGTCCTTATACTTGGCCAATTCGTAATAGAGAAGGTCATGGAAGCAGCTCAAGCATCAACTGCATTGTCGGGAAGCTTCCGTGGATATTCGTTGCAGAATGTGAACCATGTTGCACATCTCTCCGGGGCGCTGGTTGGTGTCCTTCTGGTATGGCTTCTTAGTAGAGTTCCTTCTCAATCTTCTGATCAAGATGCATCAGCTTTGCATAGGAAAGGAAGATGA 663 41.03 MQLELGKPLQNRKTEKRVNGIFWIILLNIGIYVADHVFQVRNIGALYLYHSRPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSGSFRGYSLQNVNHVAHLSGALVGVLLVWLLSRVPSQSSDQDASALHRKGR* 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38702726 38707654 - CsaV3_3G047410.1 Csa03g04435 525340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04435 220 Gene3D - 13 209 IPR035952 -
Csa03g04435 220 Pfam Rhomboid family 52 202 IPR022764 GO:0004252|GO:0016021
Csa03g04435 220 PANTHER RHOMBOID-LIKE PROTEIN 11, CHLOROPLASTIC-RELATED 3 215 - -
Csa03g04435 220 SUPERFAMILY Rhomboid-like 18 204 IPR035952 -
Csa03g04435 220 PANTHER RHOMBOID-RELATED PROTEIN 3 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04435 - - - csv:101215506 424.861
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04435 Csa-Chr3:38702726 Csa05g00318 Csa-Chr5:1979521 2.91E-07 dispersed
Csa03g04435 Csa-Chr3:38702726 Csa03g01690 Csa-Chr3:12665476 1.12E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g331 Blo01g01707 . . . . Bpe02g00236 . Bma01g02484 . . Cma01g01596 . . . . . . . . . . . . . . . . . . . . Cone4ag1536 Cone7ag1416 . . Lsi04g02223 Csa03g04435 Chy04g00264 . . . . . . . . . . Cmo01g01644 . . . Car01g01217 . . Cpe02g00381 . . . . . . . . . . . . . . . . . Cme04g00295
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009559 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33