Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04445 ATGGATAAACTGTGCTGTTTTAATGCTTCATATTCTGGGATTAGATCCGCATTGAATTACGGTAAAGGAAGAAGCCATGAGGGGATAATCAAGTATGGGTTCTGCCTGGTTAAAGGGAAAGCTAATCATCCCATGGAAGATTACCATGTTGCTAAATTTGTTCAGATTCAAGAACATGAATTGGGACTCTTTGCTATTTATGATGGTCATTTAGGAGAAAGTGTGCCTGCCTATTTACAAAAGCATTTGTTTTCTAATATCCTGAAAGAGGAAGAGTTTTGGGTTGATCCCAACAGCTCCATCTCAAAAGCATATGAGAAGACGGACCAGGCGATTCTATCCCACAGCTCTGACTTGGGTCGTGGTGGATCAACTGCTGTTACTGCTATTCTGATTAATGGTCAAAGACTATGGGTGGCCAATGTTGGAGATTCACGTGCAGTTCTTTCTAGAGGGGGTGAAGCTGTACAGATGACCATCGATCATGAACCGAATACGAATACGGAACGTCGAACCATTGAGAATAAAGGTGGCTTTGTTTCAAACATGCCAGGAGACGTACCTCGAGTGAACGGCCAGTTAGCAGTTTCACGAGCATTTGGAGACAAAAGTCTAAAATCTCACTTGCGATCTGATCCTGATATACGTGATATTAATGTAGATGCCAACACGGACATATTAATTCTTGCCAGCGACGGTCTATGGAAGGTCATGGCCAACCAAGAAGCTGTCGATATTGCACGAAGAATCAAAGACCCACTGAAGGCTGCAAAGCAGTTGATAACTGAGGCTTTGGAGAAAGAGAGTAAAGATGATATCTCATGCATTGTGGTTAGGTTTAGGTGA 846 42.55 MDKLCCFNASYSGIRSALNYGKGRSHEGIIKYGFCLVKGKANHPMEDYHVAKFVQIQEHELGLFAIYDGHLGESVPAYLQKHLFSNILKEEEFWVDPNSSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSRGGEAVQMTIDHEPNTNTERRTIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIRDINVDANTDILILASDGLWKVMANQEAVDIARRIKDPLKAAKQLITEALEKESKDDISCIVVRFR* 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38776312 38780451 + CsaV3_3G047510.1 Csa03g04445 525350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04445 281 ProSiteProfiles PPM-type phosphatase domain profile. 31 280 IPR001932 -
Csa03g04445 281 SMART PP2C_SIG_2 42 280 IPR001932 -
Csa03g04445 281 PANTHER PROTEIN PHOSPHATASE 2C 10 280 IPR015655 GO:0004722|GO:0006470
Csa03g04445 281 CDD PP2Cc 30 280 IPR001932 -
Csa03g04445 281 SUPERFAMILY PP2C-like 25 280 IPR036457 -
Csa03g04445 281 Pfam Protein phosphatase 2C 40 273 IPR001932 -
Csa03g04445 281 PANTHER PROTEIN PHOSPHATASE 2C 10-RELATED 10 280 - -
Csa03g04445 281 Gene3D - 26 281 IPR036457 -
Csa03g04445 281 SMART PP2C_4 23 278 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04445 Csa-Chr3:38776312 Csa04g00946 Csa-Chr4:7135600 3.24E-141 dispersed
Csa03g04445 Csa-Chr3:38776312 Csa03g02203 Csa-Chr3:19119262 1.28E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04445 K17506 - csv:101213414 564.303