Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04453 ATGTCCTCCATTACTCTCCTTCTTCTCCTTCTACTCTCTTCCTCTCTTCACTCCATATCAGCCACCTTCACCGTCGCCGTTGCTGGTAACCTCGCCTTCGCCGACCAACCTCTCGATCTCGACTCCTTCCCCTTTGAATACCATGGCGGCCCTCTTCTCTCCGGTAATGTAACCATCAATCTCATTTGGTATGGCAATTTCAGTCCTTCTCAGAAATCCATTGTTGTTGATTTCATCACTTCCATTTCTTCTTCTTCTTCTTCTTCCAAATCAATCATTTCCCCTCATCCCTCTGTTTCCACTTGGTGGAATGCGATTAACAGATTTTACAAGCTTGCTAAGAAACCCAAATCCTCCCGTCTTTCTCTCTCGTTGGGATCGCAAATTCTTGACCCCAAATATTCCCTTGGAAAATCTCTAACCGATCGTCACATTCTTTCTCTGGCTTCCAGAGGCAGGCAGAAATATGCTATCAATGTGGTTTTAACGGCGGCGGATGTTACCGTCGATGGATTCTGTTTTAACAAATGTGGGTCTCATGGGGTTTCATCCGGAGCTCCGATTAAGAGGAACAGGTACAGATTTGCGTATATTTGGGTGGGTAATTCAGCAACTCAATGTCCAGGGCAGTGTGCTTGGCCGTTCCACCGGCCAGTGTACGGTCCTCAGAATCCACCGTTACTGCCACCGAATAAAGATGTGGGAATGGACGGCGTTATAATAAACCTGGCAACTCTTCTCGCCGGTACTGCGACGAATCCGTTCGGGAATGGGTTTTATCAAGGCTCCAAGGAAGCACCGCTCGAGGCGGCGACGGCATGCACCGGAATATTTGGGAAAGGAGCTTTTCCAGGGTACCCTGGGGAAGTTCTGGTGGAACGAAAGACCGGAGCGAGTTACAATGCGAACGGCGGCAATGGGCGGAAATATCTGCTACCGGCGTTGTTTAATCCGATCACTTCCACTTGTTCGCCTCTGGTTTGA 984 48.88 MSSITLLLLLLLSSSLHSISATFTVAVAGNLAFADQPLDLDSFPFEYHGGPLLSGNVTINLIWYGNFSPSQKSIVVDFITSISSSSSSSKSIISPHPSVSTWWNAINRFYKLAKKPKSSRLSLSLGSQILDPKYSLGKSLTDRHILSLASRGRQKYAINVVLTAADVTVDGFCFNKCGSHGVSSGAPIKRNRYRFAYIWVGNSATQCPGQCAWPFHRPVYGPQNPPLLPPNKDVGMDGVIINLATLLAGTATNPFGNGFYQGSKEAPLEAATACTGIFGKGAFPGYPGEVLVERKTGASYNANGGNGRKYLLPALFNPITSTCSPLV* 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38842730 38844245 + CsaV3_3G047590.1 Csa03g04453 525358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04453 327 Pfam Phosphate-induced protein 1 conserved region 46 324 IPR006766 -
Csa03g04453 327 PANTHER PROTEIN EXORDIUM-LIKE 5 10 327 IPR006766 -
Csa03g04453 327 PANTHER PROTEIN EXORDIUM-RELATED 10 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04453 - - - csv:101211728 621.313
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g02158 Csa03g04453 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02156 Csa-Chr2:19478160 Csa03g04453 Csa-Chr3:38842730 7.51E-91 dispersed
Csa03g04453 Csa-Chr3:38842730 Csa04g00951 Csa-Chr4:7219418 4.34E-113 dispersed
Csa03g04452 Csa-Chr3:38839168 Csa03g04453 Csa-Chr3:38842730 2.55E-134 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g430 . . . . . . . Bma01g02609 . Cmo12g00126 Cma01g01612 . . . Sed07g1190 . . Bhi04g00771 Tan02g2402 Cmetu07g0101 . Hepe10g0488 . Lcy13g1553 Cla08g01117 Cam08g1573 Cec08g1143 Cco08g1270 Clacu08g1274 . Cre08g1055 Cone4ag1329 Cone7ag1270 Cone17ag1212 . Lsi04g02242 Csa03g04453 . Cme03g01858 . . . . . Bpe14g00458 . . . . . Cma12g00163 . . . . . Bhi09g02445 Tan01g3797 Cmetu04g2098 . Hepe01g2134 Mch11g0672 . . . . . . . . Lsi08g00974 Csa02g02158 Chy03g01361 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000841 2 4 5 3 3 1 3 3 2 3 3 3 2 3 3 2 3 5 3 2 3 3 3 4 4 4 3 1 4 1 88