Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04483 ATGTCGGGCGCCTGGGATGAACACACTGTTACCAACTCCGATCGACAACCCGACTCCGATAATCAATATTCCCACTTCAATTTCGATTTCTTCTCCGCCATTGTTAAACCCAAGGATTACTACAAAATTTTGGAGGTCGAATACGATGCTACCGACGATGACATTCGTTCCAATTACATACGACTTGCTTTGAAATGGCATCCTGATAAGCAGAAAGATAAAGACGGTGCCACTTCCAGATTTCAGGACATAAACGAGGCTTATCAAGTTTTAAGCGATCCTTCGAGAAGGCAGGAATACGACGAGAAAGGGATGCTTTATGTAAATGATGATAACATAGTGGATTACCTCAAGCGGTACAAAAGCCTTATTTTGACATGTAATGGCCTTGGTATGAAGTATTCAATTTGGTGA 414 41.79 MSGAWDEHTVTNSDRQPDSDNQYSHFNFDFFSAIVKPKDYYKILEVEYDATDDDIRSNYIRLALKWHPDKQKDKDGATSRFQDINEAYQVLSDPSRRQEYDEKGMLYVNDDNIVDYLKRYKSLILTCNGLGMKYSIW* 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39064748 39068373 - CsaV3_3G047890.1 Csa03g04483 525388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04483 137 Pfam DnaJ domain 39 101 IPR001623 -
Csa03g04483 137 ProSiteProfiles dnaJ domain profile. 39 104 IPR001623 -
Csa03g04483 137 SUPERFAMILY Chaperone J-domain 34 121 IPR036869 -
Csa03g04483 137 ProSitePatterns Nt-dnaJ domain signature. 81 100 IPR018253 -
Csa03g04483 137 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 12 137 - -
Csa03g04483 137 CDD DnaJ 39 93 IPR001623 -
Csa03g04483 137 Gene3D DnaJ domain 32 121 IPR036869 -
Csa03g04483 137 PRINTS DnaJ domain signature 41 59 IPR001623 -
Csa03g04483 137 PRINTS DnaJ domain signature 59 74 IPR001623 -
Csa03g04483 137 PRINTS DnaJ domain signature 76 96 IPR001623 -
Csa03g04483 137 PRINTS DnaJ domain signature 96 115 IPR001623 -
Csa03g04483 137 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 12 137 - -
Csa03g04483 137 SMART dnaj_3 38 96 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04483 - - - csv:101206591 290.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04483 Csa-Chr3:39064748 Csa06g03653 Csa-Chr6:29380821 1.33E-17 dispersed
Csa03g01925 Csa-Chr3:15031378 Csa03g04483 Csa-Chr3:39064748 6.97E-10 transposed
Csa02g02181 Csa-Chr2:19628314 Csa03g04483 Csa-Chr3:39064748 2.00E-15 wgd
Csa02g02224 Csa-Chr2:19981990 Csa03g04483 Csa-Chr3:39064748 6.33E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g487 . . . . . . . . . Cmo12g00144 Cma01g01638 . . Car12g00169 . . Cpe07g00157 . . . . . . . . . . . . . . . . . . Lsi04g02272 Csa03g04483 Chy04g00217 . . . . . . . . Bma02g00106 Sed13g1547 Cmo01g01685 . Cma12g00186 . . . . . Bhi09g02487 Tan01g3840 Cmetu04g2532 . Hepe01g2162 Mch11g0701 . Cla11g01415 Cam11g1472 Cec11g1502 Cco11g1497 Clacu11g1633 Cmu11g1451 Cre11g1869 . . . Cme04g00245
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002065 3 2 1 1 2 1 3 2 2 2 2 1 3 2 1 3 1 4 3 1 2 2 2 2 2 2 2 4 2 2 62