Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04485 ATGGCTTGCAAGTTCTTGTTCCCTCCTTTACTAGCTTCGTTTCTTATACTCTTAACCCTTTTCACCTCTTCATTTGCTTCAGATGATTCTCTCACTAATTTCTTCCCTACCAAAGCCATTTGCAAATTGACCTCAAATCCTTCTTACTGCATCACTGTGCTTAAACAATCCAGAGATGGTAATATCTACGACTCTGGCCGGTTCTCGATTCGTCGTTCTTTATCTAAAGCCACTAGATTCCTTGACTTGATTGAGAAGCATCTTCAGAACTCTTCAACTCTACCAAATTCAATCATCGGAGCTCTTAAAGATTGTCAGTACCTTGCTCAACTGAATATGAATTTCTTGTCTAATTCGTTTCGGGCTGTTAATGGCACTGATAGAAAGCTAACTTACTCAAAAGCTGATTATATCCAAAGTCTTCTTAGTGCCATCTTAACCAACATTGATACTTGTCTTGATGGTCTAAACACTGTAGCCTCAGGTTCTAGTTTGGAGAAAGATCTATTAGCCCCACTTATTGATTGTACCAAATCATACAGCCTTTCACTTGATCTTTTTACCAAGGGTTGGGTGCCTAGGAGGAATAGAAACAGAACACTTGAGCACCCTGGGAAAAAACACCTGCAGTTTAGGAAAGGACCGTTGCCGTTGAGAATGTCGAGACACGACCGTGCTGTTTACAACTCGGTGGCAAATCGGAGAAAGCTTTCGTCTTCTTCAGATGATGGAGTGTTGGTTAATGGTGTTGTAGTTGTGAGTCAAGATGGTCAAGGAGACTTCCTTAACATAACGGATGCTATTAATGCAGCTCCAAACAACTCTCTTGCTTCTGATGGCTACTTCTTGATTTACATTACGGCTGGTGTTTATCAAGAGTATGTGTCTGTTCCTTCAAAGAAAAAGTACTTGTTGATGATTGGAGATGGTATAAATCAAACTATTATCACAGGCAACCGGAGTGTCGCTGACGGATGGACGACTTTCAACAGTGCAACCTTCGCTGTAGCAGCAGAAGGATTCATGGCAGTAAACATAACCATCCAAAACACAGCTGGAGCAATCAAAGGCCAAGCAGTTGCATTAAGAAGTGGAGCTGATATGTGTGTTTTTTACTCCTGCAGTTTTGAAGGCTTTCAAGACACCTTATACACTCATTCCCTCAGGCAATTCTTTAGAGAATGTGACATTTACGGCACTGTTGACTTCATTTTTGGAAATGCTGCTGTTGTCTTCCAAAACTGTAACATATATCCCCGTCTCCCCCGTCCCGGTCAGGCCAACATGATCACCGCCCAAGGCCGATCCGATCCTAACCAAAACACCGGGACTTCGATCCACAACTGCACCATCCGAGCCACCCCCGAGTTGGCTGCAAGTAGTAGCTATATGAACAAGACATATTTGGGAAGGCCATGGAAACAATACTCAAGAACAGTGTATATGCAAACATTTATTGATGGATTTGTAAATCCTAAAGGTTGGGATCCATGGACAGGAGAATATTTGAGCACATTATATTATGGAGAGTATAATAATACAGGAGGTGGATCAGATACAAAGAACAGAGTTACTTGGGCAGGTTATCATGTGATTAATAATGTAACCGATGCTGCTAATTTTACAATTTCAAACTTCTTGGTTGGGGATGCGTGGTTGCCTCCAACTTGGGTGCCTTACATGGGAGGATTCGTATAA 1698 41.93 MACKFLFPPLLASFLILLTLFTSSFASDDSLTNFFPTKAICKLTSNPSYCITVLKQSRDGNIYDSGRFSIRRSLSKATRFLDLIEKHLQNSSTLPNSIIGALKDCQYLAQLNMNFLSNSFRAVNGTDRKLTYSKADYIQSLLSAILTNIDTCLDGLNTVASGSSLEKDLLAPLIDCTKSYSLSLDLFTKGWVPRRNRNRTLEHPGKKHLQFRKGPLPLRMSRHDRAVYNSVANRRKLSSSSDDGVLVNGVVVVSQDGQGDFLNITDAINAAPNNSLASDGYFLIYITAGVYQEYVSVPSKKKYLLMIGDGINQTIITGNRSVADGWTTFNSATFAVAAEGFMAVNITIQNTAGAIKGQAVALRSGADMCVFYSCSFEGFQDTLYTHSLRQFFRECDIYGTVDFIFGNAAVVFQNCNIYPRLPRPGQANMITAQGRSDPNQNTGTSIHNCTIRATPELAASSSYMNKTYLGRPWKQYSRTVYMQTFIDGFVNPKGWDPWTGEYLSTLYYGEYNNTGGGSDTKNRVTWAGYHVINNVTDAANFTISNFLVGDAWLPPTWVPYMGGFV* 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39085066 39087727 - CsaV3_3G047910.1 Csa03g04485 525390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04485 565 TIGRFAM PME_inhib: pectinesterase inhibitor domain 12 160 IPR006501 GO:0004857
Csa03g04485 565 Pfam Plant invertase/pectin methylesterase inhibitor 38 166 IPR006501 GO:0004857
Csa03g04485 565 SUPERFAMILY Pectin lyase-like 247 562 IPR011050 -
Csa03g04485 565 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Csa03g04485 565 CDD PMEI-like_3 39 191 - -
Csa03g04485 565 SMART PMEI_2 30 186 IPR006501 GO:0004857
Csa03g04485 565 Gene3D - 246 564 IPR012334 -
Csa03g04485 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 189 IPR035513 -
Csa03g04485 565 PANTHER PECTINESTERASE 15 563 - -
Csa03g04485 565 Pfam Pectinesterase 251 550 IPR000070 GO:0030599|GO:0042545
Csa03g04485 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 189 IPR035513 -
Csa03g04485 565 PANTHER PECTINESTERASE 15 563 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04485 Csa-Chr3:39085066 Csa07g01870 Csa-Chr7:18722250 0 dispersed
Csa03g04485 Csa-Chr3:39085066 Csa05g02685 Csa-Chr5:27748797 3.31E-171 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04485 K01051 - csv:101205879 1092.41