Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04489 ATGAAAAAAATTCAAAAAGAAAAAACATGCAGAAATCGCTTCTTTCCGCAATCTAAAAAATCCAAAGAAAACCGAAGCTCTCAACAATGTTCCCAAAGCCCCACCACCAACCACCGTCCCATTCTCAGCCTTTCCCCCGTTCCTTTCCCGTCACCGCCACTCCACCGCCAAGAGATTCCCCCGATGACGATTCCCCGGCCGCCCCTTCCCCTCTCACTCACGCCATCGTCCTTAAAGAACCGCCCTCCTCCGCCGACGGAGCTTCCATCGAGGTTGCCCGTCGCCCCCGTGGCCGTCCTCCTGGATCCAAGAACAAGCCAAAGCCGGCGGCGCGTCGTTGTCGCCAACCGTGACGCCGAGCCGCCGATGAGTCCTTACGTTCTAGAAGTCCCCGGCGGTAGCGATATCGTCGAAGCTATTTCCCGATTTTGCCGCCGTAGGAACACAGGGCTTTGTATTCTCAACGCTTACGGAACAGTCGGTGACGTCACTCTCCGGCAGCCGGCTTCGTCTCCGGTCGGTACCGTCACTTTCCATGGACGATTTGATATTCTTTCCGTTTGCGCTACCTTTGTTCCCCAAACGACTTCGTTCCCAATTCCTAACGGATTCACCATCACGCTAGCGGGACCACAGGGCCAGATCTTCGGCGGCTTGGTCGCTGGATCTTTAATCGGCGTTGGAACCGTCTATGTAATCGCCGCCTCGTTCAACAATCCATCGTATCAGCGGCTACCGTCGGAGGACGAAGTCAGAAAATTAACGTTCAGCGATGTGGAAGAAGGCCACTCTCCGATCTCCGGCGGGAAAGATAGCGAAAACACTGCCGCAGGCGGCGCCCAAGAGACCTGCGGTTTACTGCCGATGTACAGCACTCACTCATCTTCGGACGTAATATGGACTCCGGCGGCCAGACAACCGGCGCACCACCATCGCCAGTACTAA 945 55.87 MKKIQKEKTCRNRFFPQSKKSKENRSSQQCSQSPTTNHRPILSLSPVPFPSPPLHRQEIPPMTIPRPPLPLSLTPSSLKNRPPPPTELPSRLPVAPVAVLLDPRTSQSRRRVVVANRDAEPPMSPYVLEVPGGSDIVEAISRFCRRRNTGLCILNAYGTVGDVTLRQPASSPVGTVTFHGRFDILSVCATFVPQTTSFPIPNGFTITLAGPQGQIFGGLVAGSLIGVGTVYVIAASFNNPSYQRLPSEDEVRKLTFSDVEEGHSPISGGKDSENTAAGGAQETCGLLPMYSTHSSSDVIWTPAARQPAHHHRQY* 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39112677 39114322 - CsaV3_3G047950.1 Csa03g04489 525394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04489 314 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 113 307 - -
Csa03g04489 314 MobiDBLite consensus disorder prediction 1 20 - -
Csa03g04489 314 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 113 307 IPR014476 GO:0003680
Csa03g04489 314 MobiDBLite consensus disorder prediction 45 91 - -
Csa03g04489 314 Gene3D - 124 263 - -
Csa03g04489 314 MobiDBLite consensus disorder prediction 1 91 - -
Csa03g04489 314 MobiDBLite consensus disorder prediction 21 42 - -
Csa03g04489 314 ProSiteProfiles PPC domain profile profile. 120 260 IPR005175 -
Csa03g04489 314 CDD DUF296 125 237 IPR005175 -
Csa03g04489 314 SUPERFAMILY AF0104/ALDC/Ptd012-like 122 249 - -
Csa03g04489 314 MobiDBLite consensus disorder prediction 259 278 - -
Csa03g04489 314 Pfam Plants and Prokaryotes Conserved (PCC) domain 125 239 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04489 Csa-Chr3:39112677 Csa02g01081 Csa-Chr2:10540538 1.37E-32 dispersed
Csa02g02215 Csa-Chr2:19910568 Csa03g04489 Csa-Chr3:39112677 1.39E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04489 - - zju:107421268 266.544