Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04492 ATGGAAAACTTAGATGGGAAGAGTTCAGATTCTTCGCAATGCGTTCGCGTTGCTGTTAATATTAGACCTTTGATTACACCGGAGCTAATGGTTGGATGTACGGATTGTATTACGGTTGTGCCTGGCGAGCCTCAGGTTCAAATTGGATCGCATATATTCACTTACGATAATGTGTATGGTAGTGCTGGATCGCCATCTTATGGATTATACGACGACTGTGTTGCTCCATTGGTGGAGGCATTATTTCAGGGTTATAATGCTACTGTTCTTGCTTATGGACAGACGGGGTCTGGAAAGACCTACACAATGGGGACAAATTATAGCGGCGAAGGAACCAATGATGGAGTAATACCTAAAGTCATGGAAAAAATATTTAAAAAGGTCGAGGCAATGAAGGAATCGACAGAGTTCTTGATCAGAGTATCATTTATTGAGATATTCAAGGAAGAAGTTTTTGATTTGCTTGATGCAAGTACTTGCGTTAATACAAAGGGTGAAGGGACAAAGCCTTTTGCTCCTCCACGAGTTCCAATACAAATACGAGAAACTGTTAATGGTGGAATTACGCTTGTTGGTGTCACTGAGGCCGAAGTTCGCACCACAGAAGAAATGACATCTTACTTGTCTCGTGGTTCATTAGCACGTGCAACTGGAAGTACCAACATGAATAGTCAGTCAAGTCGATCACATGCCATCTTTACTATTACTATGGAGCAAAAGAAAAAGCTTGGGCAAGGCACGTCTCATGATGATACATGCGATGATATTCTATGTGCAAAGCTCCATTTGGTGGATCTTGCTGGTTCTGAAAGAGCAAAACGAACTGGTGCCGATGGCGTGCGCTTTAAAGAAGGTGTTCATATAAACAAAGGCCTTTTGGCACTCGGCAATGTCATAAGTGCACTTGGAGATGAGAAGAAAAGAAGAGAAGGATGTCATGTTCCCTATCGTGATAGCAAGTTAACGCGTTTGCTACAGGATTCTCTCGGAGGCAACAGCAGAACGGTGATGATTGCTTGTGTGAGTCCTGCCGACTCAAATGCAGAAGAGACCCTAAATACGCTGAAATATGCCAATCGTGCTCGCAATATTCAAAATAAAGCAGTCATCAACCGAGATCCTGTAGGAGCTCAAATACAGAAAATGCGAAGTCAAATTGAGCAGTTGCAAGCTGAGCTTCTGTTCTATCGTGGTGATGCAGGTTTACCGTATGAAGAGCTACAGATTCTAAAGCACAAAATATCATTGCTTGAAGCAAGCAATGGAGAGTTGTTGCGGGAACTTCAAGAACGTCGAGTCACTTGTGACCATCTGTCTCAGCGTGCTATTGATGCTCAGGTTGAAAAAGACAAATTTGCCATGATAATTGAATCTGTGCGTAATGGAAAATCTTTAGATGAGATTGAATCCAACTACGATAAGGATTGCAAATTGATTAAGAGTTATGTCTCAAAAATTCAAGAGCTAGAAGGCGAGGTACTGAGATTGCAAAGCTTTAAGAGTTCAAAACACAGTCAATATGCTGATCTTGCGGAGTCTGATGATGATAGGCCCCAATCTGGCAACGTCTTATTTCCATGTTCAAATGAGTATTCATCAGAATATGAGGCCAAAGCTGTAGATATTTCAGATGGAATTGAAGATCATGAAAAGGAGCTTGAACATTCGACAATGCAAGATAGACTAGATAGGGAGCTAAAAGAATTGGATAAGAAACTTGAGCAGAAGGAGGCTGAAATGAAACGGTTTGCTGGTACGGATACCTCTGTTATTAAACAACATTATGAAAAAAAGGTCCATGAATTGGAACAAGAAAAGAGAGCTTTACAGAAAGAGATCGAGGAACTTAGATGTAATCTTTCAAACATATCTTCTACATCTGATGATGGGGCTCAAAAGTTGAAGCAAGATTATCTTCAGAAATTGAATTTCTTGGAGACTCAGGTCTCGGAGTTGAAGAAGAAACAAGACGCTCAAGCTCAACTATTGAGACAGAAGCAAAAGAGTGATGAGGCAGCAAAAAGATTACAGGATGAGATCCACAGAATTAAGACCCAAAAGGTTCAACTTCAACACAAGATTAAACAAGAATCTGAGCAATTTAGATCATGGAAGGCTTCAAGAGAGAAGGAAGTTCTCCAGCTGAAGAAGGAGGGTAGGAGAAATGAATATGAGATGCACAAGCTCTTAGCTTTGAATCAAAGGCAGAAGATGGTATTGCAACGAAAGACAGAAGAAGCTGCCGCAGCAACAAAAAGGCTTAAAGAGCTTTTAGAATCTCGAAAGGCAGCACGTGAAACTTCCAGTGGGGGATCAAATGGTCCTGGAATTCAGGCTCTAATGCAGAATATTGAGCATGAGCTTGAAGTTACGGTTCGGGTGCACGAAGTTCGTTCTGAATATGAGCGCCAAATGGAAGAGAGGTCTAAGATGGCCAAAGAATTGGCCAAGCTTAAGGAGGAGGAACTGAACAGAGGATCGAATTTAAGCGACTGTACTCGAACAATGTCACCTGGTGCAAGAAATTCAAGAATTTTTGCCCTCGAAAACATGCTCGCTACATCATCTAGCTCTCTGGTTTCTATGGCCTCACATTTGTCGGAGGCAGAAGAGCGTGAACGCATTCTTGGTGGCAGGGGACGTTGGCATCAAGTTCGCTCTCTAGCCGATGCAAAGAATATTATGAATTTTTTGATGAATTTAGCATCTTCTTCAAGGTGTTTGCTATGGGATAAAGAGTTTTCTTCAAGAGAGAAGGATTCGGAAATTAGAGAACTGAAACAAAAAATAGTAAATCTTAGCGGAATGCTAAAAAAATCAGAAGCACAGAAGGCAGAACTTATTCATGAGAACTCAGCTTTGAAAAGATATTCTCAAGGGCATAACTATGATTTACGAAAACAGGAGCATCGAAACTCCGTCGTCATACCGGCAGACATGGATACCTCAGAATCAGATTATGCAAATTATAGTTCAGATGGCGATGATGATAATTATGATTGGGAGAGATCCATGAAACGGAGATTGAACAGAAAAAAAACCTCTAAAACCAAGGGTCGTGTAAGCATGGTTGTCCCAGATGGCACAGATAGTACAGAGTTTAACTTGGAGAGTTCTGGCGACGGCATACTTCGCGAGAACGAATCTACGGCTACTACCGTTGTTTGTTGTACTTGTAGCAAATTTTCTTCCTGCAAGACATCAAAGTGCCAATGCAGAGCGAATGGTGGTGCTTGTGGCTCGTCGTGTGGTTGCATACCATCAAAGTGTTCAAACAGAGGCAGTAAAAGTGATCGGGACGCTTCAATGCAACTAGATTTGTTCAAGGATGTTCGAAATGGTACAGAAAATGACGAAACTGATGAGGAAAATCAGGACCTTGTTTCTCATGGTGCTCGGTTACTTCAAAATGCATTGGCTGAGAGGCCAAGTGATGCTCCTCCTACTGCTGAAGATGGTGGTGCAAAGAGAAAGCCTCTATCAGACATCGGAAACACATTGGTAAAATCAAAGGCAAACAAAGCAAACCAAAGAAAGAAATGGCGAAAATCTACAATTCAACTGATTCCGACCCCACAACAACAAGCGTCTTCCGAACCCGAAAAGCACGAGGCCACCGAGAAGACAGAGAATGAACCAAATGAGGTTGTCAACATCCCGTTGAAACTTCCCCGAGCTATGCGATCCGCTGCCCTTAATGGTGGCGGCAACAACCTACTGAGAGAAAGAAACGCCGATCACCCCGAAGATTCCATCGGCGGCAACAAAGGACATGAACTTATTGTTCCAAAAAGAGTGGATGAGAAAGAGAATTGCAACCGTTAA 3825 42.12 MENLDGKSSDSSQCVRVAVNIRPLITPELMVGCTDCITVVPGEPQVQIGSHIFTYDNVYGSAGSPSYGLYDDCVAPLVEALFQGYNATVLAYGQTGSGKTYTMGTNYSGEGTNDGVIPKVMEKIFKKVEAMKESTEFLIRVSFIEIFKEEVFDLLDASTCVNTKGEGTKPFAPPRVPIQIRETVNGGITLVGVTEAEVRTTEEMTSYLSRGSLARATGSTNMNSQSSRSHAIFTITMEQKKKLGQGTSHDDTCDDILCAKLHLVDLAGSERAKRTGADGVRFKEGVHINKGLLALGNVISALGDEKKRREGCHVPYRDSKLTRLLQDSLGGNSRTVMIACVSPADSNAEETLNTLKYANRARNIQNKAVINRDPVGAQIQKMRSQIEQLQAELLFYRGDAGLPYEELQILKHKISLLEASNGELLRELQERRVTCDHLSQRAIDAQVEKDKFAMIIESVRNGKSLDEIESNYDKDCKLIKSYVSKIQELEGEVLRLQSFKSSKHSQYADLAESDDDRPQSGNVLFPCSNEYSSEYEAKAVDISDGIEDHEKELEHSTMQDRLDRELKELDKKLEQKEAEMKRFAGTDTSVIKQHYEKKVHELEQEKRALQKEIEELRCNLSNISSTSDDGAQKLKQDYLQKLNFLETQVSELKKKQDAQAQLLRQKQKSDEAAKRLQDEIHRIKTQKVQLQHKIKQESEQFRSWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEAAAATKRLKELLESRKAARETSSGGSNGPGIQALMQNIEHELEVTVRVHEVRSEYERQMEERSKMAKELAKLKEEELNRGSNLSDCTRTMSPGARNSRIFALENMLATSSSSLVSMASHLSEAEERERILGGRGRWHQVRSLADAKNIMNFLMNLASSSRCLLWDKEFSSREKDSEIRELKQKIVNLSGMLKKSEAQKAELIHENSALKRYSQGHNYDLRKQEHRNSVVIPADMDTSESDYANYSSDGDDDNYDWERSMKRRLNRKKTSKTKGRVSMVVPDGTDSTEFNLESSGDGILRENESTATTVVCCTCSKFSSCKTSKCQCRANGGACGSSCGCIPSKCSNRGSKSDRDASMQLDLFKDVRNGTENDETDEENQDLVSHGARLLQNALAERPSDAPPTAEDGGAKRKPLSDIGNTLVKSKANKANQRKKWRKSTIQLIPTPQQQASSEPEKHEATEKTENEPNEVVNIPLKLPRAMRSAALNGGGNNLLRERNADHPEDSIGGNKGHELIVPKRVDEKENCNR* 1275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39128226 39137149 + CsaV3_3G047980.1 Csa03g04492 525397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04492 1274 MobiDBLite consensus disorder prediction 1010 1029 - -
Csa03g04492 1274 MobiDBLite consensus disorder prediction 1140 1214 - -
Csa03g04492 1274 PANTHER KINESIN-LIKE PROTEIN KIN-4C 8 1255 - -
Csa03g04492 1274 Coils Coil 379 399 - -
Csa03g04492 1274 PRINTS Kinesin heavy chain signature 84 105 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa03g04492 1274 PRINTS Kinesin heavy chain signature 220 237 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa03g04492 1274 PRINTS Kinesin heavy chain signature 260 278 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa03g04492 1274 PRINTS Kinesin heavy chain signature 314 335 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa03g04492 1274 Coils Coil 559 586 - -
Csa03g04492 1274 Coils Coil 740 767 - -
Csa03g04492 1274 MobiDBLite consensus disorder prediction 1229 1274 - -
Csa03g04492 1274 SMART kinesin_4 12 372 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa03g04492 1274 Coils Coil 923 943 - -
Csa03g04492 1274 CDD KISc_KIF4 14 365 - -
Csa03g04492 1274 ProSitePatterns Kinesin motor domain signature. 259 270 IPR019821 GO:0003777|GO:0005524|GO:0007018
Csa03g04492 1274 Coils Coil 635 700 - -
Csa03g04492 1274 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 8 1255 - -
Csa03g04492 1274 Coils Coil 794 821 - -
Csa03g04492 1274 Coils Coil 592 626 - -
Csa03g04492 1274 MobiDBLite consensus disorder prediction 1242 1274 - -
Csa03g04492 1274 MobiDBLite consensus disorder prediction 1182 1199 - -
Csa03g04492 1274 Pfam Kinesin motor domain 47 364 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa03g04492 1274 Gene3D Kinesin motor domain 9 397 IPR036961 -
Csa03g04492 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 398 IPR027417 -
Csa03g04492 1274 ProSiteProfiles Kinesin motor domain profile. 14 364 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04492 - - - csv:101205410 2396.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02368 Csa-Chr1:20861355 Csa03g04492 Csa-Chr3:39128226 4.99E-71 dispersed
Csa03g04492 Csa-Chr3:39128226 Csa02g01874 Csa-Chr2:17829860 1.84E-68 dispersed
Csa04g02434 Csa-Chr4:24488525 Csa03g04492 Csa-Chr3:39128226 0 transposed
Csa05g00473 Csa-Chr5:3073592 Csa03g04492 Csa-Chr3:39128226 6.05E-30 transposed
Csa06g01735 Csa-Chr6:15252185 Csa03g04492 Csa-Chr3:39128226 5.73E-47 transposed
Csa02g02207 Csa-Chr2:19845191 Csa03g04492 Csa-Chr3:39128226 1.23E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g515 . . . . Bpe02g00139 . . . . . Cma01g01646 . . . Sed05g1562 . Cpe07g00170 Bhi04g01382 Tan02g2480 Cmetu04g1739 . Hepe10g0431 . Lcy13g1480 . . . . . . . Cone4ag1297 Cone7ag0858 . . Lsi04g02279 Csa03g04492 . . . . Bda11g00799 . . . . . . Cmo01g01696 . . . . . . . . . . . . . . Cla11g01423 Cam11g1479 Cec11g1509 Cco11g1505 Clacu11g1640 Cmu11g1458 Cre11g1876 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009556 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32