Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04495 ATGGAAGAGAAGGTCGATAGCATGATGAGAATCATTGAAGGCGATGGAGATTCTTTTGCAAGGAGGGCTGAAATGTATTACAGGAAGAGACCTGAACTTGTAGAACATGTAGAAGAGTCTTTTCGAGCATACCGAGCTTTAGCAGAGAGATATGATCACCTATCAAAAGACTTTCAAGGAGCAAATCGGACAATAGCTTCGATTTTTCCCGAACGAGTTCATTACACAATTGATGATGATGACTGTGAAGTTGATTTCTTTTCTCGAGAATCAACTTCAGCGAAAAGTCCTTCCGAATTTTCAAATGAATTGGATGGCTCCCCAAAACCAGGAATCCCTGAAGTTCCAAAGTTTCCTGAGAGAAGTTTTAGAAGTCCTTCCATGATAAGACGAAAGACACAACTAAAGAGAAATGAAAGCACTCCTAAAAATAGAGTTGCTTTAACTCCAAAATCAGGGCTTGATAAAACCGAAGCCTTAGAAGAGATCGATATGCTACAGAAAGAAATTCTGGCCCGACAGACAGAAATGGAATTCGTGAAGAGTTTGTATGAACGTGAATGCGAGAAATATTGGGAGATGGAAAGCAGTATCACAAAAATGCAAAAGAGAGTAAGCAACTTGCAAGACGAGTTCGAGATTGGCACTGTTATTGAAGATAATGAAGCTCGAACATTAATGGCAACAACTGCTCTAAAATCTTGCAGAGAAACTCTGGCCAAACTGCAAGAGGAACAGGAGAAAACAGTTGAAGAAACAAAATTAGAGAAAGGTAGAATAAAAGATGTAGTTACAAAGTTCGAAAGCCTCAAATTTAAGTTCCTTCCAAAGCCAATAGACCATCACGAGTGCACTGATTTACATGAAGATCAAAGCAATGAACCAGAATTGAATATCTCAGATCAAGTAGTCAATTGTACAGCAGAAGACAAACATGATATAGAACTCCTTGATCAGAAGATCAGAGAACATCTGGAAATGGATTCCAACAGCTCGTTCACTATTTCTGAGTTGGCTGAGAAAATTGACAAACTTGTAAATAAAATTGTGACACTTGAAGCTGCAGTTTCTTCTCAAACGTCTCTTGTAAAACGACTAAAATCAGAAACAGAGGTGCTCCAAGCGAACGTCCAACAGTTGGAAGAAGACAAGGAAATTCTAGTGGAGAGTTCAGAAACCATGAAGAAGAAGATAAAGGAATTGGAAGCCGAACTTGCAAGAGTGAAAAATCTAAATCAGAATGCAGAAAATCAAAATAACAACCTTCAAACCCAATTCACCAAAGCAAGTAGTAATCTCGACCACTTATCTGATAGATTGCAGACCATGAAAATGGATGATGTTGAAACTTGTGACCTCTCACAAGATGTGATGATGGTCGATCCTGATGTGAAAACAACAGAATGTTCAACAAATTCAGGATTTGATGGGAGGAAATTAGAAACTATGAAACTTGGTGACTTTTTCATGGACGAGGATAAGAGCTTTACTCTTGCAGTGGATGAGGTAAAGGAATTGGGGCATGAGGAAAACGATGGAAGACCACAACTTCATACAGAAAATAGTTGTCTTGATTCGGAGGCAAATGAATCTCATGGGGAAGAAACAAGTCCCACCTTGAGGCAGACGTTTTTGAAAGGAATAGAAGATAGAGAAAAGATTTTACTGGAAGAGTATACTTCAGTTCTAAGAGACTATAAAGACGTAAGAAACAAGTTAAGTGAAGTTGAACAAAAAAACCGTGATAGCATCTTTGAATTGGCAATGCAAGTTAAAGAACTGAAAGATGCCATTTCCTCTAAAGATGATGTTATAAAATCATTAGTAAATAATGGTGAAACAGATGAAGACACGAATGCAAGAGATGCAGACCGAGAATTACCTCAAGAAAGCATTCATGAGGCTCCTAGCTATTTGTACTCTGAATCCTCAACTCCATATATAGATCAAGTTTCAACTCCCGATTCCTATCGCGAACAAAGTATTGAGCCCACAGAAGGAAGCTACAGATCAATGAAAAATGCAAGAAGTATGAAGAAGAAAGAGGATGTAAACAAGAAATCAATTGGGGGTGATAAATTCATTACCATGTCACCAACGGAAGAAAGATTCCGCTCCCATATTGATGGACAACTAGAGATGAATCTCGAATTTTGGTTGCGATTTAGCACGGCAGTCCACCAGATTCAAAAATTCCAGACTTCAATCCAGGATCTGCAATCAGAGGTGCAAAATTTGAAGGAAAACAAGCAAGAAGGAAGTGTAAAACATCAAGGAGCAACTGAATCCGATGGTCGGCCGATATATACACATTTGAGAGAGATACAAACCGAATTATCACTTTGGTTGGAACATAGTGCAGTATTAAAAGATGAACTATGCAATAGATTCTCATCCTTATGTGACATACAAAGTGATCTATCAAGAATCACAGATGAAGGTTCAGCTGAAGAAAAGGCAGAACTGAGTGATTATCAATCTGGAAAGTTTCAAGGTGAAGTACTCAACATGAAGCAAGAAAACAGGAAGATAGCAGATGAGTTACAAGTTGGTCAAGATCGGGTAAGTCTACTACAAGTTCAAGTTGAGAAGGCTTTGGAGAGACTTGATCAAGAATTTGGTATTTCAGCAGCCAAAAGCATGAAACAATCAAAATCCTTAAGCCGAACACGAATTCCTTTACGATCTTTCTTGTTTGGGGTGAAGTTAAAGAGGCAAAAGCCATCACTTTTCTCATGTGCAAGTCCACAACTAGAGAAACAATATAGTGATCTAGCTAAAGGGCCCCTACCTCAATGA 2799 38.51 MEEKVDSMMRIIEGDGDSFARRAEMYYRKRPELVEHVEESFRAYRALAERYDHLSKDFQGANRTIASIFPERVHYTIDDDDCEVDFFSRESTSAKSPSEFSNELDGSPKPGIPEVPKFPERSFRSPSMIRRKTQLKRNESTPKNRVALTPKSGLDKTEALEEIDMLQKEILARQTEMEFVKSLYERECEKYWEMESSITKMQKRVSNLQDEFEIGTVIEDNEARTLMATTALKSCRETLAKLQEEQEKTVEETKLEKGRIKDVVTKFESLKFKFLPKPIDHHECTDLHEDQSNEPELNISDQVVNCTAEDKHDIELLDQKIREHLEMDSNSSFTISELAEKIDKLVNKIVTLEAAVSSQTSLVKRLKSETEVLQANVQQLEEDKEILVESSETMKKKIKELEAELARVKNLNQNAENQNNNLQTQFTKASSNLDHLSDRLQTMKMDDVETCDLSQDVMMVDPDVKTTECSTNSGFDGRKLETMKLGDFFMDEDKSFTLAVDEVKELGHEENDGRPQLHTENSCLDSEANESHGEETSPTLRQTFLKGIEDREKILLEEYTSVLRDYKDVRNKLSEVEQKNRDSIFELAMQVKELKDAISSKDDVIKSLVNNGETDEDTNARDADRELPQESIHEAPSYLYSESSTPYIDQVSTPDSYREQSIEPTEGSYRSMKNARSMKKKEDVNKKSIGGDKFITMSPTEERFRSHIDGQLEMNLEFWLRFSTAVHQIQKFQTSIQDLQSEVQNLKENKQEGSVKHQGATESDGRPIYTHLREIQTELSLWLEHSAVLKDELCNRFSSLCDIQSDLSRITDEGSAEEKAELSDYQSGKFQGEVLNMKQENRKIADELQVGQDRVSLLQVQVEKALERLDQEFGISAAKSMKQSKSLSRTRIPLRSFLFGVKLKRQKPSLFSCASPQLEKQYSDLAKGPLPQ* 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39146135 39148933 + CsaV3_3G048010.1 Csa03g04495 525400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04495 932 MobiDBLite consensus disorder prediction 615 631 - -
Csa03g04495 932 Coils Coil 335 355 - -
Csa03g04495 932 MobiDBLite consensus disorder prediction 636 672 - -
Csa03g04495 932 MobiDBLite consensus disorder prediction 609 685 - -
Csa03g04495 932 Coils Coil 232 256 - -
Csa03g04495 932 MobiDBLite consensus disorder prediction 93 120 - -
Csa03g04495 932 Coils Coil 191 211 - -
Csa03g04495 932 Pfam KIP1-like protein 1 52 IPR011684 GO:0003779
Csa03g04495 932 PANTHER PROTEIN NETWORKED 2A 1 925 - -
Csa03g04495 932 Coils Coil 729 756 - -
Csa03g04495 932 PANTHER PROTEIN NETWORKED 2D 1 925 - -
Csa03g04495 932 Coils Coil 559 579 - -
Csa03g04495 932 Coils Coil 363 439 - -
Csa03g04495 932 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 1 58 IPR011684 GO:0003779
Csa03g04495 932 MobiDBLite consensus disorder prediction 507 538 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04495 - - - csv:101205249 1797.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00688 Csa-Chr3:6122513 Csa03g04495 Csa-Chr3:39146135 1.72E-79 dispersed
Csa03g01300 Csa-Chr3:9929551 Csa03g04495 Csa-Chr3:39146135 1.16E-19 dispersed
Csa03g04495 Csa-Chr3:39146135 Csa07g01693 Csa-Chr7:17427361 3.22E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g520 . . . Bda03g00455 Bpe02g00141 . . Bma01g02583 . . Cma01g01647 Cma09g00594 . . . Cpe06g00455 . . . . . . . . . . . . . . . . . . . Lsi04g02281 Csa03g04495 Chy04g00206 . . . . . . . . . Sed05g1559 Cmo01g01699 Cmo09g00580 . . . Car09g00525 . . Bhi09g02499 Tan01g3853 Cmetu04g1542 . Hepe01g2171 Mch11g0710 . Cla11g01426 Cam11g1481 Cec11g1511 Cco11g1507 Clacu11g1642 Cmu11g1460 Cre11g1878 . . . Cme04g00236
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007068 1 1 1 1 1 0 2 1 1 2 1 1 2 1 1 2 1 0 2 1 1 1 3 1 1 1 1 2 1 1 36