Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04499 ATGCCGCATAGAACGACTTACTTCTTCCCCAGGCAATTTCCGGATCGCGGATTTGACTCGGCGTCAACCTCCAAACACATTTTGGATCACGAGAAGAAAATCAACAAAGACACTTTTAGTACGGAAAGCGACGCGAAACCGACTCCGAGGCCAGCGCGCGACTTTAGCGTCACGAAGAGTTCGGCTGTATCGGATCTTTTCACGGGGGACAAGGCACAAACCAATAAGAAACTGCCTGCTTTTTACGATTGGTTGGTGGACAAGAAAGCAACGCGGTCGGCAACAGCTCACGTGAAAACTTGGCTTTCCAACTGCGATGAGGACCGCGAACTTTTGCTTCCGCCACCTACCTCGGAGCCCGAGCACGATACAACGTCGGTTAAGGATCGGAGTGTTGACCGGAACTTTGACCGGCAAGTTTCACTGCCTAGATTATCAAGCGGGAGTAGCTATGCGGGGAGTTTGTTTTCAGGCACGGGAACGGGGACAGTGGATGGAAACTTTTCCAGCGACGTCAAAGATTCATCGGCGTCGAAGATATTGTCCTCGCACACGGCCAGGCCGGAAGAGATTGAGGTTGGAGATGATAAGGAAAACATAGCACAGAAAGCGACAGAGAGTTATTACCTGCAACTTGCTTTAGCTGCAACGCTTCGTTCTCATGCTAATCTCGCCGGCGATCCTGTGCTTATGGAGGAAGGCAGGGTGGAAATTACGGACGCAGAAACAGTTTCTTATCGACTTTGGGTAAGTGGTTGTCTGTCTTACTCCGACAAAATATCAGATGGTTTCTACAATATTCTGGGTATGAACCCGTATCTCTGGGTTATGTGCAATGATTTTGAGGAAGGTAGACGGCTACCTTCTCTGATGTCGCTTAGAACCATTGAACCAAGTGAGACGTCAATGGAGGTGATTCTTGTTGATAGACGTGGGGACTCTCGACTGAAAGAGCTTGAAGACAAAGCACAGGAATTATATTGTGCTTCGGAGAGCACCTTAGTGTTGGTGGAGAAACTAGGAAAGCTTGTTGCGATCTACATGGGGGGCACTTTTCCGGTGGAGCAAGGGGGGTTACACCTCCATTGGAAAGTGGTGAGCAAAAGATTGAGGGAATTTCAGAAATGCATAGTTCTTCCAATTGGTAGTCTTTCTATGGGACTATGCAGGCATCGTGCAATCCTTTTCAAGAAATTGGCTGATTATATAGGTTTGCCATGTCGGATAGCTAGAGGTTGCAAGTACTGTGTTGCAGATCATCGATCCTCTTGCCTTGTCAAAATTGAAGATGACAAGAAATCGTTGAGGGAATATGTAGTTGATTTAGTGGGGGAACCGGGAAATATACATGGTCCAGATTCATCAATTAATGGAGGGTTCCAATCTTCAATGCCTTCACCGCTCCAGATTTCTCATTTAAAAGAGTTTCAAGAACCTTACGTGGAAAGCTATTTCAATCATCAAACTGTCGGGTCAAAGCAAATCTGTGGTTTTCCTGAATATCCTCTACGTTCAGGTTTTGGACAGTACCAGATGAAAGGGGGAAGCACTTTACGTATGAGTTCAGGGGCTGAAACTGATAAATTGGTTGATCAAGCTTGTATGGGTATAGGATCGACTCAGTTGTGTTTGGAGACAAAAGTAAGCAAGGAGTGTGTGCTTCAGAATCATATAATGCCATCCACTGGGGCTGATGCCTCCGAGGTGTTGAGTTCTGTTGGTGGTGCATCTTTATGTGAAAACAAAGTTGTCATTGAAGAAATATACCAAGAAGAGGCAGTTGTAGCAGCAGGGATTTCAGTGAATGAAACCATTAATCCGTCCAAATTAACCTTGTCAACTCAAACTGATTCGAAGGAGATTGTGGGTAGATCTCAAAATTGTTCAGCATCAACATATCCAAAATATTTGACACTTGAACCATCACTTGCAATGGACTGGCTGGAAATTTCATGGGATGAATTACATATAAAGGAGCGTGTCGGAGCTGGTTCATTTGGTACAGTGCATCGTGCTGAATGGCATGGATCGGATGTTGCTGTCAAGGTTCTAACCGTGCAGGATTTCCATGATGATCAGTTAAAAGAGTTTTTAAGAGAGGTTGCAATAATGAAGCGGGTGCGCCATCCGAATGTGGTACTTTTTATGGGTGCAGTTACAAAGCGACCTCATCTTTCGATAGTGACTGAATACCTGCCTAGGGGTAGTCTATACCGCCTAATCCACAGGCCATCTTATGGTGAATTGATGGATCAAAGGAAACGATTGCGCATGGCATTGGATGTGGCAAAGGGAATCAACTACCTACATTGTCTCAATCCTCCTATAGTACACTGGGATCTTAAGTCTCCCAACTTGTTGGTTGACAAAAATTGGACAGTGAAGGTTTGTGATTTTGGGTTGTCCAGATTCAAAGCAAACACTTTCATATCATCAAAATCTGTTGCTGGAACGCCTGAGTGGATGGCTCCAGAATTCCTTCGTGGAGAGCCTTCAAATGAGAAGTCTGATGTCTACAGTTTTGGAGTGATCCTCTGGGAACTAGTCACCATGCAACAACCATGGAGTGGGCTTGGCCCGGCTCAGGTTGTGGGAGCTGTCGCTTTCCAGAACAGAAAGCTTTCTATCCCATCAAGTACTTCTCCGTTGTTGGCTTCCCTTATTGAATCTTGCTGGGCAGATGATCCTGTTCAGCGCCCATCCTTTGCAAGCATAGTCGAGTCCCTAAAAAAATTGCTGAAATCTCCACAGCAGTTGATAGCCATGGGTGGAACGTGA 2778 45.64 MPHRTTYFFPRQFPDRGFDSASTSKHILDHEKKINKDTFSTESDAKPTPRPARDFSVTKSSAVSDLFTGDKAQTNKKLPAFYDWLVDKKATRSATAHVKTWLSNCDEDRELLLPPPTSEPEHDTTSVKDRSVDRNFDRQVSLPRLSSGSSYAGSLFSGTGTGTVDGNFSSDVKDSSASKILSSHTARPEEIEVGDDKENIAQKATESYYLQLALAATLRSHANLAGDPVLMEEGRVEITDAETVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWVMCNDFEEGRRLPSLMSLRTIEPSETSMEVILVDRRGDSRLKELEDKAQELYCASESTLVLVEKLGKLVAIYMGGTFPVEQGGLHLHWKVVSKRLREFQKCIVLPIGSLSMGLCRHRAILFKKLADYIGLPCRIARGCKYCVADHRSSCLVKIEDDKKSLREYVVDLVGEPGNIHGPDSSINGGFQSSMPSPLQISHLKEFQEPYVESYFNHQTVGSKQICGFPEYPLRSGFGQYQMKGGSTLRMSSGAETDKLVDQACMGIGSTQLCLETKVSKECVLQNHIMPSTGADASEVLSSVGGASLCENKVVIEEIYQEEAVVAAGISVNETINPSKLTLSTQTDSKEIVGRSQNCSASTYPKYLTLEPSLAMDWLEISWDELHIKERVGAGSFGTVHRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPSYGELMDQRKRLRMALDVAKGINYLHCLNPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLGPAQVVGAVAFQNRKLSIPSSTSPLLASLIESCWADDPVQRPSFASIVESLKKLLKSPQQLIAMGGT* 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39171068 39182445 - CsaV3_3G048040.1 Csa03g04499 525404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04499 925 ProSitePatterns Protein kinases ATP-binding region signature. 661 682 IPR017441 GO:0005524
Csa03g04499 925 ProSitePatterns Serine/Threonine protein kinases active-site signature. 776 788 IPR008271 GO:0004672|GO:0006468
Csa03g04499 925 SUPERFAMILY Protein kinase-like (PK-like) 628 908 IPR011009 -
Csa03g04499 925 PRINTS Tyrosine kinase catalytic domain signature 729 742 IPR001245 GO:0004672|GO:0006468
Csa03g04499 925 PRINTS Tyrosine kinase catalytic domain signature 770 788 IPR001245 GO:0004672|GO:0006468
Csa03g04499 925 PRINTS Tyrosine kinase catalytic domain signature 836 858 IPR001245 GO:0004672|GO:0006468
Csa03g04499 925 PRINTS Tyrosine kinase catalytic domain signature 880 902 IPR001245 GO:0004672|GO:0006468
Csa03g04499 925 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 109 923 - -
Csa03g04499 925 Pfam Ethylene-responsive protein kinase Le-CTR1 241 449 - -
Csa03g04499 925 MobiDBLite consensus disorder prediction 109 132 - -
Csa03g04499 925 ProSiteProfiles Protein kinase domain profile. 655 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04499 925 MobiDBLite consensus disorder prediction 29 57 - -
Csa03g04499 925 CDD STKc_MAP3K-like 661 909 - -
Csa03g04499 925 Gene3D Transferase(Phosphotransferase) domain 1 734 921 - -
Csa03g04499 925 Gene3D Phosphorylase Kinase; domain 1 648 732 - -
Csa03g04499 925 SMART serkin_6 655 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04499 925 Pfam Protein tyrosine and serine/threonine kinase 655 909 IPR001245 GO:0004672|GO:0006468
Csa03g04499 925 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1 109 923 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03375 Csa-Chr3:30479921 Csa03g04499 Csa-Chr3:39171068 7.74E-69 dispersed
Csa03g04499 Csa-Chr3:39171068 Csa04g02535 Csa-Chr4:25059511 5.62E-27 dispersed
Csa06g01155 Csa-Chr6:9630287 Csa03g04499 Csa-Chr3:39171068 8.61E-51 dispersed
Csa07g00501 Csa-Chr7:3598934 Csa03g04499 Csa-Chr3:39171068 8.03E-43 dispersed
Csa03g04499 Csa-Chr3:39171068 Csa06g02656 Csa-Chr6:23385603 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78099 PF07714 PK_Tyr_Ser-Thr 1.10E-63 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04499 - - csv:101204522 1847.02