Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04504 ATGGCAAATGAGATACTCCAATTGGATATTCAGGATCATCATGTAGTTATGGATAATGGTATATTGCAAGTGACACTGTCCAAGCCAGATGGAAATGTTACTGGGATAAAATACAACAGCATTGACAATGTTTTAGAAGTTGATGATAAGGAAGCTCATAGAGGGTACTGGGACCTTGTGTGGAACTCTGGGACTCCGGGAACGACAGGAACATTCGATGAGATGAGAGGAAGAGAATTTGAAGTGATGGTGCAAAATGAGGAACAGATAGAGCTGTCGTTTAAAAGGAATTATTCATTCAAGGACAAGGCTGTACCCTTAAACATAGACAAAAGGTTCATAATGCTTCGTAACTCCTCTGGATTCTACTCATATGCCATCTATGAGCACATGAGGGAATGGCCACCATTCAACCTTCCTCAAACGAGGATTGTGTTTAAGCTAAGAAAAGACAAGTTTCACTATATGGCCATAGCAGATGACAGACAGAGATTCATGCCACTTCCTGAGGATAGACTACGTCACAGAGGAAAACCTTTGGACTTTCCAGAGGCTGTTTTGCTGGTCAATCCTAAAGAACCTGAGTTCAAGGGAGAGGTAGATGATAAGTACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCAATGGATCCTCCGGTGGGTTTCTGGCAAATCACTCCAAGCAGTGAGTTCAGATCAGGTGGACCCCTCAAACAGAATCTGACATCTCATGTGGGCCCATATGCTCTTGCGATGTTTCTTAGTGCTCACTATTCAGGAGAGGACTTGGTGTTGAAGGTCAGTCCTGATGAGCCTTGGAAGAAAGTTTTTGGCCCTGTATTTTTCTATCTAAATTCTGTTTCTGATGGAGGTGATCCACTTTCTTTGTGGGAAGATGCTAAAACTCAGATGTCGAAGGAAGTTCAAAGTTGGCCATATTCTTTTCCAGCTTCTGAGGATTTCCCCCCACCAAACCAACGTGGTAGATTGACTGGAAAATTATTTGTCCTTGATAGATATGTTAACGAGGAGAAAATGCCGGCAACTGATGCGTATGTGGGACTTGCAGCACCAGGAGATGTTGGATCATGGCAAACGGAGAAGAAGGGCTACCAGTTTTGGACCAAAACAGATGCAGATGGCTCGTTTAGCATTGAACACGTACGCATCGGGGACTACAATCTTTATGCTTGGGTTCCTGGCTTCATTGGTGACTACCGTTATGATGTTCTCATTAATGTGTCTTCAGGTAGTGATATGGACGTAGGCGATCTTGTTTACGAGCCGCCTAGGAATGGGCCCACATTATGGGAAATAGGCATTCCTGATCGCTCTGCTGCTGAATTCTATATTCCCGATCCTGATCCAAAGTATATTAACAAATTGTATATCAATCATCCAGATAGATTCAGGCAATATGGACTGTGGGAAAAATATGCTGAGTTACATCCTGATGCAGACTTGGTATATTCAGTTGGTGTCAGTGATTACACAAAAGATTGGTTCTTTGCTCATGTTAATCGAAAGAGAAATGATGGATCCCATTTAGCAACCACGTGGGAAATCAAGTTTAGACTTGATAATATCATAGATAAGGGCGTCAGCTATACTTTACGAGTGGCTCTGGCCACTGCCAATGTTGCTGAATTACAGATTCAGGTAAATAATCCAGAAGCAAAGCCAAGTTTATTTACAACAGGAGTGATTGGACATGACAATGCAATTGCTAGGCATGGAATTCATGGACTCTATCGACTCTATAGTGTTGACATATTAGGATCTCTACTTGTGGAAGGAGAAAACACCATCTTCCTTTCACAAATTATAAACAATTCATCTTTCAATGGCATCATGTATGATTATATCCGCCTCGAAGGCCCCCCGTCCGATTTGATACCTCTAAACAATTCATAG 1929 41.84 MANEILQLDIQDHHVVMDNGILQVTLSKPDGNVTGIKYNSIDNVLEVDDKEAHRGYWDLVWNSGTPGTTGTFDEMRGREFEVMVQNEEQIELSFKRNYSFKDKAVPLNIDKRFIMLRNSSGFYSYAIYEHMREWPPFNLPQTRIVFKLRKDKFHYMAIADDRQRFMPLPEDRLRHRGKPLDFPEAVLLVNPKEPEFKGEVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYALAMFLSAHYSGEDLVLKVSPDEPWKKVFGPVFFYLNSVSDGGDPLSLWEDAKTQMSKEVQSWPYSFPASEDFPPPNQRGRLTGKLFVLDRYVNEEKMPATDAYVGLAAPGDVGSWQTEKKGYQFWTKTDADGSFSIEHVRIGDYNLYAWVPGFIGDYRYDVLINVSSGSDMDVGDLVYEPPRNGPTLWEIGIPDRSAAEFYIPDPDPKYINKLYINHPDRFRQYGLWEKYAELHPDADLVYSVGVSDYTKDWFFAHVNRKRNDGSHLATTWEIKFRLDNIIDKGVSYTLRVALATANVAELQIQVNNPEAKPSLFTTGVIGHDNAIARHGIHGLYRLYSVDILGSLLVEGENTIFLSQIINNSSFNGIMYDYIRLEGPPSDLIPLNNS* 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39272026 39279212 - CsaV3_3G048100.1 Csa03g04504 525409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04504 642 Pfam Polysaccharide lyase family 4, domain II 355 425 IPR029413 -
Csa03g04504 642 Pfam Rhamnogalacturonate lyase family 7 200 IPR010325 -
Csa03g04504 642 Gene3D - 7 270 IPR014718 GO:0030246
Csa03g04504 642 CDD RGL4_M 331 430 IPR029413 -
Csa03g04504 642 CDD RGL4_C 442 630 - -
Csa03g04504 642 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 1 637 - -
Csa03g04504 642 Gene3D - 328 427 - -
Csa03g04504 642 Gene3D - 438 630 - -
Csa03g04504 642 SUPERFAMILY Galactose mutarotase-like 12 291 IPR011013 GO:0003824|GO:0005975|GO:0030246
Csa03g04504 642 CDD RGL4_N 14 301 - -
Csa03g04504 642 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 637 - -
Csa03g04504 642 Pfam Polysaccharide lyase family 4, domain III 440 629 IPR029411 -
Csa03g04504 642 SUPERFAMILY Starch-binding domain-like 328 426 IPR013784 GO:0030246
Csa03g04504 642 SUPERFAMILY Galactose-binding domain-like 437 630 IPR008979 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04504 Csa-Chr3:39272026 Csa03g04506 Csa-Chr3:39289600 0 dispersed
Csa03g04504 Csa-Chr3:39272026 Csa03g04505 Csa-Chr3:39279931 0 tandem
Csa03g00697 Csa-Chr3:6262365 Csa03g04504 Csa-Chr3:39272026 0 transposed
Csa02g02193 Csa-Chr2:19725119 Csa03g04504 Csa-Chr3:39272026 0 wgd
Csa03g04504 Csa-Chr3:39272026 Csa06g03096 Csa-Chr6:26531028 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04504 K18195 - csv:101204193 1339.32