Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g04504 | ATGGCAAATGAGATACTCCAATTGGATATTCAGGATCATCATGTAGTTATGGATAATGGTATATTGCAAGTGACACTGTCCAAGCCAGATGGAAATGTTACTGGGATAAAATACAACAGCATTGACAATGTTTTAGAAGTTGATGATAAGGAAGCTCATAGAGGGTACTGGGACCTTGTGTGGAACTCTGGGACTCCGGGAACGACAGGAACATTCGATGAGATGAGAGGAAGAGAATTTGAAGTGATGGTGCAAAATGAGGAACAGATAGAGCTGTCGTTTAAAAGGAATTATTCATTCAAGGACAAGGCTGTACCCTTAAACATAGACAAAAGGTTCATAATGCTTCGTAACTCCTCTGGATTCTACTCATATGCCATCTATGAGCACATGAGGGAATGGCCACCATTCAACCTTCCTCAAACGAGGATTGTGTTTAAGCTAAGAAAAGACAAGTTTCACTATATGGCCATAGCAGATGACAGACAGAGATTCATGCCACTTCCTGAGGATAGACTACGTCACAGAGGAAAACCTTTGGACTTTCCAGAGGCTGTTTTGCTGGTCAATCCTAAAGAACCTGAGTTCAAGGGAGAGGTAGATGATAAGTACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCAATGGATCCTCCGGTGGGTTTCTGGCAAATCACTCCAAGCAGTGAGTTCAGATCAGGTGGACCCCTCAAACAGAATCTGACATCTCATGTGGGCCCATATGCTCTTGCGATGTTTCTTAGTGCTCACTATTCAGGAGAGGACTTGGTGTTGAAGGTCAGTCCTGATGAGCCTTGGAAGAAAGTTTTTGGCCCTGTATTTTTCTATCTAAATTCTGTTTCTGATGGAGGTGATCCACTTTCTTTGTGGGAAGATGCTAAAACTCAGATGTCGAAGGAAGTTCAAAGTTGGCCATATTCTTTTCCAGCTTCTGAGGATTTCCCCCCACCAAACCAACGTGGTAGATTGACTGGAAAATTATTTGTCCTTGATAGATATGTTAACGAGGAGAAAATGCCGGCAACTGATGCGTATGTGGGACTTGCAGCACCAGGAGATGTTGGATCATGGCAAACGGAGAAGAAGGGCTACCAGTTTTGGACCAAAACAGATGCAGATGGCTCGTTTAGCATTGAACACGTACGCATCGGGGACTACAATCTTTATGCTTGGGTTCCTGGCTTCATTGGTGACTACCGTTATGATGTTCTCATTAATGTGTCTTCAGGTAGTGATATGGACGTAGGCGATCTTGTTTACGAGCCGCCTAGGAATGGGCCCACATTATGGGAAATAGGCATTCCTGATCGCTCTGCTGCTGAATTCTATATTCCCGATCCTGATCCAAAGTATATTAACAAATTGTATATCAATCATCCAGATAGATTCAGGCAATATGGACTGTGGGAAAAATATGCTGAGTTACATCCTGATGCAGACTTGGTATATTCAGTTGGTGTCAGTGATTACACAAAAGATTGGTTCTTTGCTCATGTTAATCGAAAGAGAAATGATGGATCCCATTTAGCAACCACGTGGGAAATCAAGTTTAGACTTGATAATATCATAGATAAGGGCGTCAGCTATACTTTACGAGTGGCTCTGGCCACTGCCAATGTTGCTGAATTACAGATTCAGGTAAATAATCCAGAAGCAAAGCCAAGTTTATTTACAACAGGAGTGATTGGACATGACAATGCAATTGCTAGGCATGGAATTCATGGACTCTATCGACTCTATAGTGTTGACATATTAGGATCTCTACTTGTGGAAGGAGAAAACACCATCTTCCTTTCACAAATTATAAACAATTCATCTTTCAATGGCATCATGTATGATTATATCCGCCTCGAAGGCCCCCCGTCCGATTTGATACCTCTAAACAATTCATAG | 1929 | 41.84 | MANEILQLDIQDHHVVMDNGILQVTLSKPDGNVTGIKYNSIDNVLEVDDKEAHRGYWDLVWNSGTPGTTGTFDEMRGREFEVMVQNEEQIELSFKRNYSFKDKAVPLNIDKRFIMLRNSSGFYSYAIYEHMREWPPFNLPQTRIVFKLRKDKFHYMAIADDRQRFMPLPEDRLRHRGKPLDFPEAVLLVNPKEPEFKGEVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYALAMFLSAHYSGEDLVLKVSPDEPWKKVFGPVFFYLNSVSDGGDPLSLWEDAKTQMSKEVQSWPYSFPASEDFPPPNQRGRLTGKLFVLDRYVNEEKMPATDAYVGLAAPGDVGSWQTEKKGYQFWTKTDADGSFSIEHVRIGDYNLYAWVPGFIGDYRYDVLINVSSGSDMDVGDLVYEPPRNGPTLWEIGIPDRSAAEFYIPDPDPKYINKLYINHPDRFRQYGLWEKYAELHPDADLVYSVGVSDYTKDWFFAHVNRKRNDGSHLATTWEIKFRLDNIIDKGVSYTLRVALATANVAELQIQVNNPEAKPSLFTTGVIGHDNAIARHGIHGLYRLYSVDILGSLLVEGENTIFLSQIINNSSFNGIMYDYIRLEGPPSDLIPLNNS* | 643 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 39272026 | 39279212 | - | CsaV3_3G048100.1 | Csa03g04504 | 525409 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g04504 | 642 | Pfam | Polysaccharide lyase family 4, domain II | 355 | 425 | IPR029413 | - | |
Csa03g04504 | 642 | Pfam | Rhamnogalacturonate lyase family | 7 | 200 | IPR010325 | - | |
Csa03g04504 | 642 | Gene3D | - | 7 | 270 | IPR014718 | GO:0030246 | |
Csa03g04504 | 642 | CDD | RGL4_M | 331 | 430 | IPR029413 | - | |
Csa03g04504 | 642 | CDD | RGL4_C | 442 | 630 | - | - | |
Csa03g04504 | 642 | PANTHER | RHAMNOGALACTURONATE LYASE B-RELATED | 1 | 637 | - | - | |
Csa03g04504 | 642 | Gene3D | - | 328 | 427 | - | - | |
Csa03g04504 | 642 | Gene3D | - | 438 | 630 | - | - | |
Csa03g04504 | 642 | SUPERFAMILY | Galactose mutarotase-like | 12 | 291 | IPR011013 | GO:0003824|GO:0005975|GO:0030246 | |
Csa03g04504 | 642 | CDD | RGL4_N | 14 | 301 | - | - | |
Csa03g04504 | 642 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 1 | 637 | - | - | |
Csa03g04504 | 642 | Pfam | Polysaccharide lyase family 4, domain III | 440 | 629 | IPR029411 | - | |
Csa03g04504 | 642 | SUPERFAMILY | Starch-binding domain-like | 328 | 426 | IPR013784 | GO:0030246 | |
Csa03g04504 | 642 | SUPERFAMILY | Galactose-binding domain-like | 437 | 630 | IPR008979 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g04504 | Csa-Chr3:39272026 | Csa03g04506 | Csa-Chr3:39289600 | 0 | dispersed | |
Csa03g04504 | Csa-Chr3:39272026 | Csa03g04505 | Csa-Chr3:39279931 | 0 | tandem | |
Csa03g00697 | Csa-Chr3:6262365 | Csa03g04504 | Csa-Chr3:39272026 | 0 | transposed | |
Csa02g02193 | Csa-Chr2:19725119 | Csa03g04504 | Csa-Chr3:39272026 | 0 | wgd | |
Csa03g04504 | Csa-Chr3:39272026 | Csa06g03096 | Csa-Chr6:26531028 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g04504 | K18195 | - | csv:101204193 | 1339.32 |