Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04505 ATGAAAAACAATAATCTTTTCCCCTCAATTTTATTTTGCCTTTTCTCTTCTTTTCTCTTCCCTTTCATTTCTTCAACAACACCCTCATGGCCGCCCATGAACTCCAGCCACGCCGTCTCGACTGCCGCCCCGCCACCTCCGCCGCTGCAACTGCACATTCTCGACCAACATGTTGTGATGGACAATGGAATAATCAAAGTTAATTTGTCGAATCCAAAGGGTATGGTCAATGGAATAGAGTACGAAGGGATTGAAAACTTGCTTTCTCTGGATAACGATGAAGATAATAGAGGATATTGGGACATCGTTTGGAATTTGAAAGGAAGTTCAGGAACCAAGGGGATTTTTGATCGATTGGAAGCAACAGACTTCAAGGTAATTGTTGAAAATGAAGAACAAATAGAACTCTCATTCAGCAGAACTTACAACAATAATTCATCCACCGGAGGCAACCTCATTCCATTAAACATCGACAAAAGGTTTGTGATGCTTCGTAATTCATCAGGATTCTATACGTACGCCATTTACGAACACTTGAAAGAATGGCCTGCATTTAACCTCGACAACACTAGAATCGCATTCAAGCCACGAAAAGACAAGTTTCATTACATGGCTGTAGCAGATAAAAGACAAAGACTCATGCCTTTGCCTGACGATCGAAAGCCACCGCGAGGGCAAGCCTTAGCTTATCCCGAGGCCGTGCTTCTTGTCGATCCCATAGAACCAGACTTCAAGGGAGAGGTAGATGACAAATACCAATACGGCTGCGAAAGCAAAGACAGTCGGGTTCACGGGTGGATATCCACCGACCCACCCATTGGGTTTTGGCAAATCGCACCCACCGAGGAATTCCGCTCCGGTGGACCCCTCAAACAATTTCTCACCTCCCACGTCGGTCCCACAACCCTCACTGTTTTTCATAGCACTCATTACGCAGGAGAGGATATGGTTATAAAGTTTGGAGATAATGAGCCATGGAAGAAGGTTTATGGTCCTATCTTTATCCATCTCAACTCCTTGCCTGAGGGAGAGGATCCACTTAGACTTTGGCAAAATGCTAAACAACAGATGATGGCTGAAGTTCAAAGCTGGCCTTATAGTTTTATTGCTTCTGAGGATTTTCCCAAATCCGATCAACGAGGCACCGTCAGCGGCAAAATCCTAATCCGGGAGAGATATGTGAGTGATGAATCTGTGCCTGCTAGTGGTGCTTATGTGGGCTTGGCACTTCCTGGAGAACTTGGGTCTTGGCAAAATGAAAGCAAGGGCTACCAATTTTGGACAAGAGCAGATCAGAATGGAAGTTTCTCTTTGAATAATGTTCGGAGTGGAAATTATAGTCTTTATGGATGGGTTCCGAATTTTATTGGCAATTACCAATACAGTGCTTTCATCGTCGTAACACCAGGCAGTGATATCAAAGTGGGTGAACTTGTTTTTGAGCCCCCAAGAGATGGTCCTACATTGTGGGAAATAGGCATTCCTGACCGTACTGCTGCAGAATTCTACATACCCGATCCTAATCCAAAGTATATCAACAAACTCTATGTTAATCATTCAGATCGGTTTAGGCAGTATGGATTATGGGAAAGATATGCAGAGTTATATCCTGACGAGGATCTAGTTTACACCGTCGGCCTTAGTGACTACAGAAAAGATTGGTTCTTTTCACAAGTTACCAGGAAAATAGGAGACAACAAATATGCCGGAACTACCTGGAAAATCAAGTTCCAACTTGACAGTCCAGATACTAATGGAACATATAGGCTGCGTCTTGCATTGGCCACTGCACATGGTGCGGAGTTACAAGTCCGGCTGAATGATGCACAAGCACTTCCTCCATTATTTACAACTGGATTGATTGGAAAGGACAATACTGTAGCTAGACATGGAATCCATGGTCTCTATCGACTTTACACGGTTGACATTCCGGGTGGTGAGCTTGTGGTAGGCAACAATACAATTCTTCTTACGCAAGCAAGTAGCAACAGCCCTTTTGTGGGGATCATGTATGATTATATTCGTCTAGAAAGACCCTTAACATCCAAAATGTAA 2055 43.8 MKNNNLFPSILFCLFSSFLFPFISSTTPSWPPMNSSHAVSTAAPPPPPLQLHILDQHVVMDNGIIKVNLSNPKGMVNGIEYEGIENLLSLDNDEDNRGYWDIVWNLKGSSGTKGIFDRLEATDFKVIVENEEQIELSFSRTYNNNSSTGGNLIPLNIDKRFVMLRNSSGFYTYAIYEHLKEWPAFNLDNTRIAFKPRKDKFHYMAVADKRQRLMPLPDDRKPPRGQALAYPEAVLLVDPIEPDFKGEVDDKYQYGCESKDSRVHGWISTDPPIGFWQIAPTEEFRSGGPLKQFLTSHVGPTTLTVFHSTHYAGEDMVIKFGDNEPWKKVYGPIFIHLNSLPEGEDPLRLWQNAKQQMMAEVQSWPYSFIASEDFPKSDQRGTVSGKILIRERYVSDESVPASGAYVGLALPGELGSWQNESKGYQFWTRADQNGSFSLNNVRSGNYSLYGWVPNFIGNYQYSAFIVVTPGSDIKVGELVFEPPRDGPTLWEIGIPDRTAAEFYIPDPNPKYINKLYVNHSDRFRQYGLWERYAELYPDEDLVYTVGLSDYRKDWFFSQVTRKIGDNKYAGTTWKIKFQLDSPDTNGTYRLRLALATAHGAELQVRLNDAQALPPLFTTGLIGKDNTVARHGIHGLYRLYTVDIPGGELVVGNNTILLTQASSNSPFVGIMYDYIRLERPLTSKM* 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39279931 39287293 - CsaV3_3G048110.1 Csa03g04505 525410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04505 684 Gene3D - 55 327 IPR014718 GO:0030246
Csa03g04505 684 Pfam Polysaccharide lyase family 4, domain II 402 474 IPR029413 -
Csa03g04505 684 CDD RGL4_M 379 478 IPR029413 -
Csa03g04505 684 Pfam Polysaccharide lyase family 4, domain III 488 676 IPR029411 -
Csa03g04505 684 SUPERFAMILY Starch-binding domain-like 376 475 IPR013784 GO:0030246
Csa03g04505 684 SUPERFAMILY Galactose-binding domain-like 485 677 IPR008979 -
Csa03g04505 684 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 37 683 - -
Csa03g04505 684 Gene3D - 376 475 - -
Csa03g04505 684 Pfam Rhamnogalacturonate lyase family 50 248 IPR010325 -
Csa03g04505 684 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 37 683 - -
Csa03g04505 684 CDD RGL4_C 490 677 - -
Csa03g04505 684 Gene3D - 486 677 - -
Csa03g04505 684 CDD RGL4_N 57 339 - -
Csa03g04505 684 SUPERFAMILY Galactose mutarotase-like 58 339 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04505 Csa-Chr3:39279931 Csa06g03509 Csa-Chr6:28655208 0 dispersed
Csa03g04504 Csa-Chr3:39272026 Csa03g04505 Csa-Chr3:39279931 0 tandem
Csa03g04505 Csa-Chr3:39279931 Csa03g04506 Csa-Chr3:39289600 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04505 K18195 - csv:101203789 1299.65