Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa03g04506 | ATGTCATCCAGAGCCGTCCGCTTGCAGATACGAGATCATCATGTGGTGGTGGATAATGGTATATTGCAACTAACTTTATCAAAACCTGATGGAATTATCACTGGTGTACGATATAATGGTGTTGACAATCTACTTGAAGTTCTTAATCCTGAATCTAATAGAGGGTACTGGGACCTTGTTTGGAATTCTCCAGGAAGCAAGGGAGTATTTGACGTGATTAAAGGGTCAAGGTTTAGGGTTATAGTGGAAAATGAGGAACAGGTTGAGCTTTCTTTTGTGAGAATGTGGGATCCCTCCCTTGAGGGCAAGTTTGTTCCTTTGAATATAGACAAAAGGTTCATAGTACTACGTGGTTCTTCTGGATTTTACTCTTATGCTATTTATGAGCACTTGAAGGATTGGCCTGATTTCGATATTGGTGAAACCAGGATTACCTTTAAACTTAGAAAAGACAAGTTTCAGTACATGGCTGTAGCTGACAATAGGCAGAGAGTCATGCCCCTGCCTGATGATCGGTTATCTGGAAGATGCCAAACTTTGGCCTATCCTGAAGCTGTCTTGCTTACTAATCCCAAGAACCCTGCTCTCAAGGGTGAGGTGGATGACAAATACCAATACTCGTGTGAAAACAACAACTTAAAGGTTCATGGGTGGATAAGCACCAACCCACCCACCGGGTTTTGGCAGATTACTCCCAGTGATGAATTTCGGTCAGGTGGGCCTCTTAAGCAAAGTCTAACATCACACGTGGGACCTACAACCCTTGCTATATTTCTTAGCACTCATTATGCGGGACAAGATTTGGTGCCAAAATTTAGAGCTGGCGAGCCATGGAAGAAAGTTTTTGGCCCTGTTTTTCTCTATCTTAATTCCACCTCAGTTGGAGATGACCCATTTTGGTTATGGGAGGATGCTAAAATACAGATGATGGCAGAAGTCGATAGTTGGCCATATAGTTTCCCTGCATCAGAGGATTTCCCAAAAAAAGATCAACGGGGCATCGTTAGTGGCAGGCTACTGGTTTTTGATAGATATGTGGATCAAGACTATCTTCCAGCCTGTGGAGCCTTCGTCGGATTGTCTGCACCAGGAGAAGCGGGATCATGGCAGAGAGAATGCAAGGGATATCAATTCTGGACTAGAGCAGATGATGGTGGTTATTTTACCATCAACCACGTACACACCGGTGAGTATAATCTATATGCATGGGTTCCTGGCTTCATTGGAGATTATCGCTGTGATGCCCTCATCAATGTAAGCCAAGGATCTTGCATTGAAATGGGTGATCTTGTATATGAACCTCCTAGAGATGGGCCTACGCTTTGGGAAATAGGCATTCCCGATCGTTCTGCATCCGAGTTCTATGTTCCTGATCCTAATCCAATACATATTAATAAACTCTTTGTTGACCATCCTGACAGGTTCCGGCAGTACGGGTTGTGGAACAGATACGCTGAATTATACCCGAATGAGGATTTAGTATATACAGTTGGCACAAGCGACTATAGAAAAGATTGGTTCTTTGCTCATGTCCCTAGGAAGACAAACAATTCACATGAAGGAACTACTTGGCAAATCAAATTCAAACTTGATAGAGTGGATCACAAGAGTATGTATACACTACGGGTTGCAATTGCTTCTGCTACTCTTGCTGAATTGCAGGTGCGGGTAAATGATCCGAGATCGAAGCGACCTTTGTTTACGAGCGGGTTGATAGGGAGGGACAATTCAATTGCAAGACATGGAATTCATGGAATTTATTGGGTTTATGGTGTGGGCGTAGCTGGGTGTCATCTTGTTGAAGGAGAAAACACAATCTTCTTGACTCAGCCACGCTGCACCAGCCCTTTTCAGGGTATCATGTATGATTATATCCGTCTTGAAGGTCCTCCAACAAAGTGA | 1902 | 43.48 | MSSRAVRLQIRDHHVVVDNGILQLTLSKPDGIITGVRYNGVDNLLEVLNPESNRGYWDLVWNSPGSKGVFDVIKGSRFRVIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTLAYPEAVLLTNPKNPALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGGPLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFWLWEDAKIQMMAEVDSWPYSFPASEDFPKKDQRGIVSGRLLVFDRYVDQDYLPACGAFVGLSAPGEAGSWQRECKGYQFWTRADDGGYFTINHVHTGEYNLYAWVPGFIGDYRCDALINVSQGSCIEMGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPIHINKLFVDHPDRFRQYGLWNRYAELYPNEDLVYTVGTSDYRKDWFFAHVPRKTNNSHEGTTWQIKFKLDRVDHKSMYTLRVAIASATLAELQVRVNDPRSKRPLFTSGLIGRDNSIARHGIHGIYWVYGVGVAGCHLVEGENTIFLTQPRCTSPFQGIMYDYIRLEGPPTK* | 634 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 39289600 | 39296784 | - | CsaV3_3G048120.1 | Csa03g04506 | 525411 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa03g04506 | 633 | CDD | RGL4_C | 442 | 628 | - | - | |
| Csa03g04506 | 633 | CDD | RGL4_M | 331 | 430 | IPR029413 | - | |
| Csa03g04506 | 633 | SUPERFAMILY | Galactose-binding domain-like | 437 | 628 | IPR008979 | - | |
| Csa03g04506 | 633 | Gene3D | - | 329 | 423 | - | - | |
| Csa03g04506 | 633 | CDD | RGL4_N | 14 | 293 | - | - | |
| Csa03g04506 | 633 | Pfam | Polysaccharide lyase family 4, domain II | 355 | 425 | IPR029413 | - | |
| Csa03g04506 | 633 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 1 | 632 | - | - | |
| Csa03g04506 | 633 | Pfam | Rhamnogalacturonate lyase family | 9 | 200 | IPR010325 | - | |
| Csa03g04506 | 633 | SUPERFAMILY | Galactose mutarotase-like | 12 | 296 | IPR011013 | GO:0003824|GO:0005975|GO:0030246 | |
| Csa03g04506 | 633 | Pfam | Polysaccharide lyase family 4, domain III | 440 | 627 | IPR029411 | - | |
| Csa03g04506 | 633 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 1 | 632 | - | - | |
| Csa03g04506 | 633 | SUPERFAMILY | Starch-binding domain-like | 345 | 425 | IPR013784 | GO:0030246 | |
| Csa03g04506 | 633 | Gene3D | - | 438 | 628 | - | - | |
| Csa03g04506 | 633 | Gene3D | - | 5 | 304 | IPR014718 | GO:0030246 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa02g02193 | Csa-Chr2:19725119 | Csa03g04506 | Csa-Chr3:39289600 | 0 | dispersed | |
| Csa03g00697 | Csa-Chr3:6262365 | Csa03g04506 | Csa-Chr3:39289600 | 0 | dispersed | |
| Csa03g04504 | Csa-Chr3:39272026 | Csa03g04506 | Csa-Chr3:39289600 | 0 | dispersed | |
| Csa03g04506 | Csa-Chr3:39289600 | Csa06g03096 | Csa-Chr6:26531028 | 0 | dispersed | |
| Csa03g04505 | Csa-Chr3:39279931 | Csa03g04506 | Csa-Chr3:39289600 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa03g04506 | K18195 | - | csv:101203947 | 1336.24 |