Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04507 ATGGCTGTTGCATCTGAAGAGACCACAAGCATATGCAACCACTGCGGAAGAGATATTCCGTCATCAAATATCGATCTGCATTCTGTTCATTGCGCGAGGAATCTTGAAAAATGTAAAATATGCGGCGATATGGTTCCTAAAAGACATGCGGAGGAACATTTTTTGAACACACATGCGCCAGTTTCCTGTTCGCTGTGTAGCGAGACCATGGAGCGGGACATTTTAGCAATTCATAAAGGTGAGAATTGCCCCCAAAGGATTGTCACTTGCGAGTTCTGTGAGTTCCCATTGCCAGCAATAGATCTGGCAGAACATCAGGAAGTTTGTGGTAACCGGACTGAACTTTGTCCTCTGTGTCGTTGTTATATAAGATTACGAGAACGATATAACCATGAAAACAATTGCAAGGGTATTATACCTGCTGATAACATTGCAGAGTCTTCCAGGGACGTCGGGGCAGCACCAGAAAGAGACCATCAAGCTAGAGATCGAGGTGCTCGAAGAAGACAGCCACAGGAGTTTTCTACTCGTCGTCTTATATTCACTATTGCAATAACTGGTATTGCCGTTCTATTAGGATCCCTATTTTTCCCGAGGAAGACCGAGAGCAACGGCGTACACTGA 624 44.87 MAVASEETTSICNHCGRDIPSSNIDLHSVHCARNLEKCKICGDMVPKRHAEEHFLNTHAPVSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCPLCRCYIRLRERYNHENNCKGIIPADNIAESSRDVGAAPERDHQARDRGARRRQPQEFSTRRLIFTIAITGIAVLLGSLFFPRKTESNGVH* 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39297531 39300938 - CsaV3_3G048130.1 Csa03g04507 525412

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04507 207 MobiDBLite consensus disorder prediction 151 171 - -
Csa03g04507 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 57 IPR013083 -
Csa03g04507 207 PANTHER XIAP-ASSOCIATED FACTOR 1-LIKE 1 206 - -
Csa03g04507 207 PANTHER TRAF-TYPE ZINC FINGER PROTEIN-RELATED 1 206 - -
Csa03g04507 207 MobiDBLite consensus disorder prediction 147 171 - -
Csa03g04507 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 111 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04507 - - - csv:101203543 437.187
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04507 Csa-Chr3:39297531 Csa07g00340 Csa-Chr7:2530430 1.16E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g547 . . . . . Bpe04g00411 Bma04g00425 Bma01g02578 . . . . . . . Cpe06g00460 . . . . . . . . . . . . . . . Cone4ag1661 Cone7ag0870 . . Lsi04g02290 Csa03g04507 . . . . . . . . . . Sed05g1547 . Cmo09g00586 . . . Car09g00531 . Cpe02g00485 Bhi09g02525 Tan01g3871 Cmetu04g0727 . . . . Cla11g01438 Cam11g1494 Cec11g1530 Cco11g1525 Clacu11g1656 Cmu11g1473 Cre11g1891 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003824 1 2 1 2 2 0 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 0 1 7 2 2 44