Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04509 ATGGGGAGAGGCAAAATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAGGTGACTTTCTCGAAGCGTAGGAGCGGATTGTTAAAGAAGGCGAAAGAACTAGCGATTCTCTGCGATGCGGATGTCGGAGTTATCATCTTCTCCAGTACCAGCAAGCTCTATGAATACTCCAGCACCAGCATGAAAGCACTAATAGAACGATATAACAAAACAAAAGAGGAGAACCATCAGCTTGGAATCCCGACTTCTGAAGTCAAGTACTGGCAAAGGGAAGCAGCGACCTTACGGCAGCAACTGCAGAGCTTACATGAAAATCACCGACAGATGATGGGTGAAGAGCTGACTGGTCTGAGCGTCAAGGACCTACAGAACCTAGAAAATCAATTGGAGATAAGTCTACGTGGTGTCCGTATGAAAAAGGACCAAATCTTAATGGAAGAGATACAAGAACTAAACAGAAAGGGAAACCTAATTCATCATGACAATATGGAACTTTATAAGAAGGTCTATGGAACAAAGGACGCCAATGGAGCCCACATAAGCAGTATTACAAATGGACTTAGTGTTGGAGAGGATGCAGGCATACCTATTAACCTTCAACTCAGCCAGCCACAACAACAAGACAATGAGGCACCAGAAAGAGCTACAAAACTGGGCAGACTACAACTACGCTAG 678 44.25 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSSTSMKALIERYNKTKEENHQLGIPTSEVKYWQREAATLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEISLRGVRMKKDQILMEEIQELNRKGNLIHHDNMELYKKVYGTKDANGAHISSITNGLSVGEDAGIPINLQLSQPQQQDNEAPERATKLGRLQLR* 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39311564 39327673 + CsaV3_3G048150.1 Csa03g04509 525414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04509 225 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Csa03g04509 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa03g04509 225 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Csa03g04509 225 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Csa03g04509 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa03g04509 225 MobiDBLite consensus disorder prediction 202 225 - -
Csa03g04509 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 223 - -
Csa03g04509 225 Coils Coil 86 113 - -
Csa03g04509 225 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa03g04509 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa03g04509 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa03g04509 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa03g04509 225 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa03g04509 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa03g04509 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Csa03g04509 225 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04509 Csa-Chr3:39311564 Csa04g01173 Csa-Chr4:10151096 2.99E-90 dispersed
Csa04g01862 Csa-Chr4:18359391 Csa03g04509 Csa-Chr3:39311564 6.64E-41 dispersed
Csa03g02884 Csa-Chr3:27586916 Csa03g04509 Csa-Chr3:39311564 9.49E-47 transposed
Csa02g02211 Csa-Chr2:19879642 Csa03g04509 Csa-Chr3:39311564 9.97E-41 wgd
Csa03g04509 Csa-Chr3:39311564 Csa06g03095 Csa-Chr6:26520126 5.45E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31431 PF01486 K-box 8.00E-26 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04509 K09264 - csv:101203545 431.024