Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04517 ATGGCGGTGAATATTATTATATTTCCTCATTGTTTATTTCGTTTTTCCCTTTTTAGTAACGTGTCAAACCAATTTGCTATCCCTACACGACTCTCTTCGCTTCCTTCTTCTCCGAGAGCCTCTTCGCGATCTTCTTCTTCCTCTGTTCTTTGCTCTTTTTCTCCCTCTTCTGATATGGACGGTTCAGCGGGTCTAGGTTTGTATCCATCGCACCGTACTAAAACTGTTCATTTGGTGAGGCATGCCCAGGGATTTCATAATGTGGCAGGAGAAAAGGACGTGAACGAATATCTATCTTTTGATTATTTTGATGCTCAACTTACTTCATTAGGATGGAAACAGGTTGACAATTTGCGGAAACATGTACAATCATGTGGACTTTCTAAGAGAATTGAGTTAGTCATCACATCCCCATTGTTCAGGACTATGGAAACCGCAGTTGGAACATTCGGTGGTGAAGGTTACTCGGATGGTATAAATGTTCCTCCATTAATGATAGCAAATGCAGGAGATTGCAACCGCCCTGCAATTTCAAGTTTGAATTGCCCGCCATTTTTGGCAGTAGAGCTTTGTCGGGAACATTTGGGTGTTCATCCATGTGACAAGAGGCGAAGTATTAACGAGTACCGGTCTTTTTTCCCTGCTATTGATTTTTCACTGATTGAGAACGATGAAGATATCCTGTGGCAGCCAGACATCAGAGAAACCAACGCTGAAGTTGCAGAAAGGGGAATGGAATTTCTTAAATGGCTCTGGACCCGTAAGGAGAAGGAGATTGCAATTGTTAGCCACAGCGGATTCTTATTTCATGCATTGAGTGCATTTGGAAGTGATTGTCATCCATCTATAAAGGATGAAATTTGCAAACATTTTGCCAATTGTGAGCTACGTTCCTTCGTTCTTGTTGATAGGAGCATGATTGGGTCAGAATCCTCAGCGACCAATTTTCCAGGCGGAGTACCGAAAGGAGTTGATCTTCCTAGTGATGTTGCAGCTGACATGCATCCGGAGAAGGGAGTTTCAAATGATCAAGACATGGCTTGA 1044 42.62 MAVNIIIFPHCLFRFSLFSNVSNQFAIPTRLSSLPSSPRASSRSSSSSVLCSFSPSSDMDGSAGLGLYPSHRTKTVHLVRHAQGFHNVAGEKDVNEYLSFDYFDAQLTSLGWKQVDNLRKHVQSCGLSKRIELVITSPLFRTMETAVGTFGGEGYSDGINVPPLMIANAGDCNRPAISSLNCPPFLAVELCREHLGVHPCDKRRSINEYRSFFPAIDFSLIENDEDILWQPDIRETNAEVAERGMEFLKWLWTRKEKEIAIVSHSGFLFHALSAFGSDCHPSIKDEICKHFANCELRSFVLVDRSMIGSESSATNFPGGVPKGVDLPSDVAADMHPEKGVSNDQDMA* 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39370481 39375767 - CsaV3_3G048230.1 Csa03g04517 525422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04517 347 SUPERFAMILY Phosphoglycerate mutase-like 73 304 IPR029033 -
Csa03g04517 347 PANTHER PHOSPHOGLYCERATE MUTASE-LIKE PROTEIN 1 59 334 - -
Csa03g04517 347 CDD HP_PGM_like 75 146 IPR013078 -
Csa03g04517 347 SMART PGAM_5 75 271 IPR013078 -
Csa03g04517 347 Gene3D - 69 326 IPR029033 -
Csa03g04517 347 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 59 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04517 - - - csv:101202826 676.011
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04517 Csa-Chr3:39370481 Csa04g01167 Csa-Chr4:10104166 2.08E-131 dispersed
Csa03g04516 Csa-Chr3:39360023 Csa03g04517 Csa-Chr3:39370481 4.76E-155 tandem
Csa03g04517 Csa-Chr3:39370481 Csa03g04518 Csa-Chr3:39376916 1.02E-158 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g558 . . . . Bpe02g00151 . . Bma01g02575 . . . Cma09g00605 . . . Cpe06g00466 . . . . . . . . . . . . . . . Cone4ag1277 Cone7ag0874 . . Lsi04g02298 Csa03g04517 Chy04g00186 . . . Bda11g00812 . . Bpe05g00448 . . Sed05g1536 . Cmo09g00593 . . . Car09g00537 . . Bhi09g02533 Tan01g3880 Cmetu04g2852 . Hepe01g2188 Mch11g0734 . Cla11g01447 Cam11g1500 Cec11g1537 Cco11g1533 Clacu11g1664 Cmu11g1480 Cre11g1900 . . . Cme04g00216
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000410 2 5 1 2 2 0 4 4 2 4 2 4 4 4 4 4 4 4 3 4 4 3 3 3 3 2 5 16 9 2 113