Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04520 ATGGAGCTGAATGAACACTATTTGTTAGAAGAAGTTTTGGGTTTGAGAAGATCAGAAGTAATGAATTGGGAATTAGCAATCGCTACGGAAATGAATGGGTGGAATTTTGATTGTTCTGATTCATTGCCAATGGATCAGCAGCACAATGATCTTGCTTATCTTCTGAATGGGGAAGATCAGTATTTGGGCACGGAGGCGGCGATGGCGGCGGCGGGGAGCACGGGGGATTCGATGTCGTATAGTACGATGGCGGAGACGCCGGGGGGGAGTAGTTTTGAGGTTTATAATATTAGGAGTATGGAAGAGGAGGAACTTGGGATTTTGGAGGATGAGATTCATAATCTTGAAGTTCAAGCTAACAATGATTCTTACTATTGTAAAGTTGAGCCTGTTGTTGTTGATCAATCTCCTGCAAAAATGCTACCTATTTTCAAAACGGGTGGTAGTAAGAAACTTCAGGGGCAGCCTTCCAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGACTCAACGATCGCCTCTCTATGCTCAGATCCATTGTCCCCAAAATCAGCAAGATGGATAGAACTGCGATTCTTGCGGATGCAATTGAGTACGTGAAGGAACTGATGGAGAGAATCCAAATTTTGGAAAAGGAAATTAGTAATTCAAATAAGTTGGGGATTTTGAGATCACATATTGTGAAACCAAATAATGAGTACTTGGTGAGAAATTCAGCTAAGTTTAATGTGGAAAGAAGAGAAGAAGAAACAAAGATTGAGATATGTTGTGCAGCAAAGCCAGGGTTATTATTGTCAACAGTAAACACTCTTGAAGCAATGGGACTTGACATTCAACACTGTGTTATTAGCTGTTTCAATGACTTTGCAATTCAAGCTTCTTGTTCTCCGGGAAATGAGGTTGGAAGAATGGTGAGCACAGAAGAAGTTAAGCAAGCATTATTTGAAAATGCTGGATATGGAGGAAAGTGCTTGTAG 978 41.72 MELNEHYLLEEVLGLRRSEVMNWELAIATEMNGWNFDCSDSLPMDQQHNDLAYLLNGEDQYLGTEAAMAAAGSTGDSMSYSTMAETPGGSSFEVYNIRSMEEEELGILEDEIHNLEVQANNDSYYCKVEPVVVDQSPAKMLPIFKTGGSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYVKELMERIQILEKEISNSNKLGILRSHIVKPNNEYLVRNSAKFNVERREEETKIEICCAAKPGLLLSTVNTLEAMGLDIQHCVISCFNDFAIQASCSPGNEVGRMVSTEEVKQALFENAGYGGKCL* 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39394424 39397324 + CsaV3_3G048260.1 Csa03g04520 525425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04520 325 Gene3D - 150 219 IPR036638 GO:0046983
Csa03g04520 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 216 IPR036638 GO:0046983
Csa03g04520 325 SMART finulus 160 209 IPR011598 GO:0046983
Csa03g04520 325 Coils Coil 98 118 - -
Csa03g04520 325 Coils Coil 193 220 - -
Csa03g04520 325 Pfam Helix-loop-helix DNA-binding domain 160 203 IPR011598 GO:0046983
Csa03g04520 325 CDD ACT_UUR-ACR-like 251 292 - -
Csa03g04520 325 PANTHER - 2 77 - -
Csa03g04520 325 PANTHER - 80 325 - -
Csa03g04520 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
Csa03g04520 325 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 77 - -
Csa03g04520 325 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 80 325 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g02231 Csa03g04520 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04520 Csa-Chr3:39394424 Csa05g01831 Csa-Chr5:21650877 5.55E-18 dispersed
Csa06g00213 Csa-Chr6:1472037 Csa03g04520 Csa-Chr3:39394424 1.65E-09 dispersed
Csa03g02566 Csa-Chr3:24067204 Csa03g04520 Csa-Chr3:39394424 4.89E-37 transposed
Csa02g02231 Csa-Chr2:20027274 Csa03g04520 Csa-Chr3:39394424 3.15E-90 wgd
Csa03g04520 Csa-Chr3:39394424 Csa06g03087 Csa-Chr6:26485325 4.03E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31432 PF00010 HLH 5.60E-10 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04520 - - csv:101222621 637.876