Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04526 ATGTCGTCTCTACATTTCCTCTCCTTTCTCACTCTCTTCTCCCTCTTCTTTCTCCCCGGAATCAAATCCATCGACGACCAACGTCAAATCCTCACCAAATTCAAATCCTCTCTCCATACTTCAAACTCCAATGTCTTTCATAACTGGACACTCCAAAACCCCATCTGCACTTTCTCTGGAATCGCTTGTAATTCACATGGTTTCGTTACTCAAATTGACCTTTCTCAACAGGCTTTATCTGGGGTTGTTCCTTTTGATTCCCTTTGTCAATTGCCAGCCTTGGAGAAGCTAGCTCTTCGCTCCAATTCCCTCTCCGGTGAAATCACCAACAGTTTGAACAATTGTGTGAAATTGAAGTATTTGGATCTCAGTGGCAATTCCTTCTCCACCTCTTTCCCCAGCATACATTCTTTGAGTGAATTGGAGTTTCTGTATTTGAATTTAAGTGGGATTTCAGGGAAGTTTCCATGGGAGTCAATAGGGAATTTGAAAGATTTGATTGTGTTGAGCGTAGGGGATAACAGTTTTGATAGCACTACTTTTCCATTGGAGGTTACTAATTTGAAGAAGCTTAATTGGCTTTACATGTCAAATTGTAGTTTAACAGGGGAAATTCCAAGGTCTATTGGTAATCTCACGGAGCTTCTTAATTTGGAATTTTCAGATAATTCTATAACAGGGACTATTCCGGTGGAGATTGGGAACTTGAACAAGCTACGGCAGTTGGAGTTATACAATAATCAATTAACGGGGACACTTCCAGTGGGGTTAAGAAATCTAACCGGCCTTAAGAATTTTGATGCTTCCTTGAATTATATTCATGGGGATTTGTCAGAGTTGAGGTATTTGACGAACTTGGTTTCTTTGCAAATGTTTGAAAATCAAATCTCCGGTCAAATTCCGGTAGAGTTTGGTGAATTTAAGTCGCTTGTGAATCTATCACTTTATAAGAACAAGCTTACAGGGCCTATTCCTCAATCGATCGGTTCTTGGACGGAGTTTGATTACATTGATGTATCTGAAAATTTTTTGACGGGGTCGATTCCTCCTGATATGTGTAAGAAGGGGACGATGAAGAAGCTTTTGGTTCTTCAGAATAATTTAACCGGTGAAATTCCGGCGACTTACGGTAGTTGCTCTACTTTGACCCGGTTTAGAGTTAGTCAGAACTTGCTCACCGGCGTTGTTCCGTCTGGAATTTGGGGATTACCGAACGTGAATATAATTGATCTCGACTCGAACAAGTTGGAAGGTTCGATCACTTCCGATATCGGAAAAGCTGTGGCTCTCTCGGAATTATACGTCGGAAATAACCGATTCTCAGGTCGATTGCCATTAGAGATTTCGCAAGCGAAATCTCTCGCTTCGGTTGATTTGAGCAACAACCAATTCTCCGATGAACTTCCGGCGACTATCGGTGATCTGAAAAAGCTCGATAGCTTCGAATTGCAGGGGAACAAATTATCTGGTTCGATTCCAGAGTCGATAGGCTTGTGTAAATCTTTGAGTATCATCAATCTGGCGCAAAATTACTTATCTGGACATATCCCTTCATCGCTAGGGCTTCTTCCAGTTTTAAACTCTTTGAATCTCTCCAATAACCACCTATCAGGTGAAATCCCCTCGACATTTTCGCATCTGAAATTGAGTTCACTCGATCTTTCGAACAATGAATTAACCGGTCCAGTACCCGAGACACTCTCGAACGGAGCCTACAAAGAAAGCTTCGCCGGAAACCCAGGCCTCTGCAGTGTGGCCGACAACTTCATACAGCGATGTGCACAAAGTTCCGGCCCGTCGAAGGACGTCAGAGTACTCGTCATCGCTTTCGCCATCGGATTAATTCTTCTCAGCTTCACGCTATGGTGCTTCATAAACTTAAGAAAAAGCGGAAACGATCGAGATCGATCTCTTAAAGAGGAATCGTGGGACCTAAAATCGTTCCACGTAATGACATTCACAGAAGAGGAGATTCTCGATTCCATTAAAGACGAGAATCTAATCGGAAAAGGAGGTTCCGGCAACGTTTACAAAGTAACAGTCGGAAACGGAAAAGAGTTCGCCGTGAAGCATATTTGGAACACAAATCCATACGAGGAGAAGAAGAATAAGAGTTACCGTAGTTCATCGCCGATGCTTGTGAAACAGAAAACAAAGTCATCGGAATTCGACTCAGAAGTCAAAACTCTGAGCTCAATCCGTCATGTGAACGTGGTGAAGCTGTACTGTAGCATAACAAGCGAAGTTTCAAGCTTGTTGGTATATGAATATATGGCAAATGGAAGCTTATGGGACAGACTTCACACGTCGAGAAAAATGGAGTTGGATTGGGAAACAAGATACGAAATCGCAGTCGGAGCAGCGAAGGGATTAGAATATCTTCATCACGGCTGTGACCGCCCGGTAATTCACCGGGATGTTAAATCAAGTAATATACTTTTGGATGAATTTTTGAAGCCCAGAATCGCTGATTTTGGGCTTGCTAAAATTCTACACACCACAGCATCCTCCAACGACACTAGCCATGTCATTGCAGGCACCCCGGGGTACATAGCCCCAGAATATGGATACACGTACAAAGTGGATGAGAAGAGCGATGTGTATAGTTTTGGAGTTGTTTTGATGGAGTTAGTGAGTGGGAAAAAGGCTATAGAGGGAGAGTATGGAGAGAACAAGGAGATAGTTCAATGGGTATCAAAGAATTTGAAGACAAGAGAAAGTATATTAAGTATAATTGATTCAAGAATACCAGATGCATATAAAGAGGATGCAATAAAGGTACTAAGAATTGGCATTTTGTGTACTGCAAGGCTTCCAAATTTAAGACCAAATATGAGAAGTGTGGTTCAAATGCTTGAAGGAGCTCAACCATCTCCTTTGCTTGGGATTATTATTACCAAAGATGTTGGGAGTAATAATGATAATGTTAAAAAGGTTTTGTCTTAG 2946 41.85 MSSLHFLSFLTLFSLFFLPGIKSIDDQRQILTKFKSSLHTSNSNVFHNWTLQNPICTFSGIACNSHGFVTQIDLSQQALSGVVPFDSLCQLPALEKLALRSNSLSGEITNSLNNCVKLKYLDLSGNSFSTSFPSIHSLSELEFLYLNLSGISGKFPWESIGNLKDLIVLSVGDNSFDSTTFPLEVTNLKKLNWLYMSNCSLTGEIPRSIGNLTELLNLEFSDNSITGTIPVEIGNLNKLRQLELYNNQLTGTLPVGLRNLTGLKNFDASLNYIHGDLSELRYLTNLVSLQMFENQISGQIPVEFGEFKSLVNLSLYKNKLTGPIPQSIGSWTEFDYIDVSENFLTGSIPPDMCKKGTMKKLLVLQNNLTGEIPATYGSCSTLTRFRVSQNLLTGVVPSGIWGLPNVNIIDLDSNKLEGSITSDIGKAVALSELYVGNNRFSGRLPLEISQAKSLASVDLSNNQFSDELPATIGDLKKLDSFELQGNKLSGSIPESIGLCKSLSIINLAQNYLSGHIPSSLGLLPVLNSLNLSNNHLSGEIPSTFSHLKLSSLDLSNNELTGPVPETLSNGAYKESFAGNPGLCSVADNFIQRCAQSSGPSKDVRVLVIAFAIGLILLSFTLWCFINLRKSGNDRDRSLKEESWDLKSFHVMTFTEEEILDSIKDENLIGKGGSGNVYKVTVGNGKEFAVKHIWNTNPYEEKKNKSYRSSSPMLVKQKTKSSEFDSEVKTLSSIRHVNVVKLYCSITSEVSSLLVYEYMANGSLWDRLHTSRKMELDWETRYEIAVGAAKGLEYLHHGCDRPVIHRDVKSSNILLDEFLKPRIADFGLAKILHTTASSNDTSHVIAGTPGYIAPEYGYTYKVDEKSDVYSFGVVLMELVSGKKAIEGEYGENKEIVQWVSKNLKTRESILSIIDSRIPDAYKEDAIKVLRIGILCTARLPNLRPNMRSVVQMLEGAQPSPLLGIIITKDVGSNNDNVKKVLS* 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39463518 39467402 + CsaV3_3G048320.1 Csa03g04526 525431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04526 981 ProSiteProfiles Protein kinase domain profile. 662 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04526 981 ProSitePatterns Protein kinases ATP-binding region signature. 668 690 IPR017441 GO:0005524
Csa03g04526 981 SUPERFAMILY L domain-like 56 227 - -
Csa03g04526 981 SUPERFAMILY L domain-like 429 568 - -
Csa03g04526 981 SUPERFAMILY L domain-like 183 470 - -
Csa03g04526 981 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Csa03g04526 981 Pfam Leucine Rich Repeat 117 137 IPR001611 GO:0005515
Csa03g04526 981 Pfam Leucine Rich Repeat 526 547 IPR001611 GO:0005515
Csa03g04526 981 Pfam Leucine Rich Repeat 187 212 IPR001611 GO:0005515
Csa03g04526 981 ProSiteProfiles Leucine-rich repeat profile. 117 139 IPR001611 GO:0005515
Csa03g04526 981 CDD STKc_IRAK 668 954 - -
Csa03g04526 981 Pfam Protein kinase domain 664 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04526 981 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Csa03g04526 981 SUPERFAMILY Protein kinase-like (PK-like) 648 953 IPR011009 -
Csa03g04526 981 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 6 960 - -
Csa03g04526 981 Gene3D Ribonuclease Inhibitor 137 356 IPR032675 -
Csa03g04526 981 Gene3D Transferase(Phosphotransferase) domain 1 758 959 - -
Csa03g04526 981 SMART serkin_6 662 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04526 981 Gene3D Ribonuclease Inhibitor 25 136 IPR032675 -
Csa03g04526 981 Gene3D Phosphorylase Kinase; domain 1 634 757 - -
Csa03g04526 981 Gene3D Ribonuclease Inhibitor 357 596 IPR032675 -
Csa03g04526 981 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 6 960 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04526 Csa-Chr3:39463518 Csa06g03657 Csa-Chr6:29405707 0 dispersed
Csa03g04526 Csa-Chr3:39463518 Csa03g04527 Csa-Chr3:39472827 0 tandem
Csa01g00091 Csa-Chr1:545619 Csa03g04526 Csa-Chr3:39463518 3.11E-06 transposed
Csa06g00469 Csa-Chr6:3978872 Csa03g04526 Csa-Chr3:39463518 0 transposed
Csa07g00651 Csa-Chr7:4672994 Csa03g04526 Csa-Chr3:39463518 0 transposed
Csa02g02237 Csa-Chr2:20106593 Csa03g04526 Csa-Chr3:39463518 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78100 PF00069 Pkinase 5.20E-43 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04526 - - csv:101223100 1900.18