Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04527 ATGGCTCTCTGTTACTACTTCTTCCTTCTTCACTTTCTGGTTTCTCTTGCCTTTGGGACTGATCAATCTCTGTTTTTCTCTTTGATGCAAAAGGGCGTTGTTGGGAATTCTCTGCCTTCCGATTGGACTGGAAATTCCTTCTGTAATTTCACCGGTATTACTTGTAATGAAAAGGGGTTGGTGGTGGGGGTTGATCTTTCAGGCAGGGCGGTTTCTGGGAGGTTTCCGGCGGATGTTTGTTCTTATTTACCGGAGTTGAGAGTGCTGCGGCTTGGACGGAGTGGGTTACGTGGAACGTTTCCAGGTGGGGTAACGAACTGCTCTGTTTTGGAAGAATTGGATATGAGTTCTCTGTCTCTGATGGGGACGTTACCGGATTTCTCGTCGTTGAAAACCTTGAGGATACTCGACCTGTCGTACAATAACTTCACCGGTGACTTTCCATTGTCAGTTTTCAGTTTGACGAATCTCGAGAGTTTGAATTTCAACGAGGACAACAATTTCAAAACGTGGCAGTTGCCGGAGAATGTGTCTGGGTTGACGAAGTTGAAATCGATGGTGTTAACGACTTGTATGTTGGAGGGGAGAATTCCGGCGACGATTGGGAATATGACGGCGCTTGTTGACCTTGAACTAAGTGGGAATTTCCTCACCGGAAAAATCCCAAAGGAAATCGGGAATTTGAAGAATTTGAGAGCGTTGGAGCTTTATTACAATTCATTAGTCGGTGAAATTCCAGAAGAACTTGGGAACTTAACAGAGCTCGTGGACTTGGACATGTCAGTCAACAAGTTGACCGGAAAATTACCAGAATCCATTTGTCGTCTTCCGAAACTTGAAGTTCTTCAGCTTTACAACAATTCATTAACAGGAGAGATTCCAATTTCAATTTCAAATTCAACGACACTCACTATGTTATCACTTTACGACAACTACATGACGGGACAAGTTCCAAGTAATTTGGGTCAATTCTCACCTATGGTGGTTCTCGACTTATCGGAGAATTATTTCTCGGGTCCATTACCGACAGATGTCTGTGGACAAGGTAAACTAATGTATTTCCTTGTATTGGAGAATAAATTTTCCGGTCAAATCCCACCGTCGTACGGTACATGTCAATCCCTTTTACGGTTTCGTGTCAGTTCGAATAATTTAGAAGGTCCGGTGCCGGTGGGACTTTTGGGTCTTCCTCATGTTTCGATTATTGATTTTGGTAACAATAATTTAAGCGGTGAAATTCCCAATTCTTTTGTTAAAGCCAGGAATCTTTCTGAATTGTTTATGCAGAGTAATAAAATTTCCGGCGTGTTACCGCCGGAGATTTCAAAAGCTACCAATTTAGTTAAGATCGATCTTAGCAACAATCTCTTATCTGGTCCAATTCCTTCAGAAATTGGGAATCTCAGAAAGCTTAATCTGTTGCTTTTACAAGGAAATCATTTGAATTCTTCAATACCCACTTCACTTTCCGATCTTAAATCTTTGAATGTTCTTGATTTGTCTGATAATCGATTAACCGGCAACATACCGGAAAGTCTCTGTGAATTGTTACCAAATTCAATCAATTTCTCAAACAATCAACTCTCCGGTCCAATTCCTCTGTCTTTAATCAAAGGTGGATTAGTTGAAAGCTTTTCCGGCAACCCAGGATTATGCGTTTCAGTTTACTTGGATGCATCCGATCAGAAATTCCCAATTTGTTCTCAAAACAACAACAAAAAACGATTGAACTCCATTTGGGCAATTGGAATATCGGCTTTTATAATCTTGATCGGAGCTGCTCTGTATTTACGACGACGTTTGAGCAGAGAAAAATCCGTAATGGAACAAGACGAAACATTATCATCTTCGTTCTTCTCATACGATGTGAAAAGCTTCCACCGAATCAGCTTCGACCCAAGAGAGATAATCGAATCAATGGTGGATAAGAACATCGTGGGGCATGGTGGCTCCGGTACGGTGTACAAAATTGAACTAAGCAGTGGAGAAATGGTAGCCGTTAAAAGACTATGGAGTCGAAAGGGGAAAGACACGTCTTCGGATCAAGAACAGTTGTATTTGGATAAAGAATTGAAAACAGAAGTTGAAACATTGGGAAGTATAAGGCACAAAAACATAGTGAAATTATATTGCTATTTCTCAAGTTTGGATTGCAGTCTTTTGGTTTATGAGTATATGCCAAATGGGAATTTATGGGATGCTTTACATAAGGGTTGGATTCATTTGGATTGGCCAACTAGACATCAAATTGCTTTAGGCATAGCTCAAGGATTGGCTTATCTTCATCATGATTTGTTGCCTTCTATCATTCACAGAGACATTAAAACAACTAATATTCTGTTGGATGTTAATTATCATCCTAAGGTTGCAGATTTTGGCATTGCTAAGGTTTTGCAAGCTAGAACTGGCAAGGATTCCACCACCACCGTCATTGCCGGAACTTATGGCTATCTCGCTCCGGAGTATGCATATTCATCGAAGGCTACAACAAAGTGTGACGTGTATAGCTTTGGGATCGTGTTGATGGAGTTGATAACGGGGAAGAAGCCGGTGGAGGCGGAGTTTGGAGAGAACAAGAACATCATATATTGGGTATCAAACAAAGTAGACACAAAGGAAGGAGCAATGGAAGTGTTAGACAAAAGGGTTTCATGTTCATTCAAAGATGAGATGATTGAAGTTCTAAGGATTGCAATTCGTTGTACATACAAGAATCCAGCCCTTAGACCCACCATGAAAGAAGTGGTTCAACTATTGATTGAAGCTGACCCTTGCAAATTCGATTCCCATAACAAATCCTCCAAACACACCACCACCAAAATCAACAACCCATTTGACCTATGA 2844 41.0 MALCYYFFLLHFLVSLAFGTDQSLFFSLMQKGVVGNSLPSDWTGNSFCNFTGITCNEKGLVVGVDLSGRAVSGRFPADVCSYLPELRVLRLGRSGLRGTFPGGVTNCSVLEELDMSSLSLMGTLPDFSSLKTLRILDLSYNNFTGDFPLSVFSLTNLESLNFNEDNNFKTWQLPENVSGLTKLKSMVLTTCMLEGRIPATIGNMTALVDLELSGNFLTGKIPKEIGNLKNLRALELYYNSLVGEIPEELGNLTELVDLDMSVNKLTGKLPESICRLPKLEVLQLYNNSLTGEIPISISNSTTLTMLSLYDNYMTGQVPSNLGQFSPMVVLDLSENYFSGPLPTDVCGQGKLMYFLVLENKFSGQIPPSYGTCQSLLRFRVSSNNLEGPVPVGLLGLPHVSIIDFGNNNLSGEIPNSFVKARNLSELFMQSNKISGVLPPEISKATNLVKIDLSNNLLSGPIPSEIGNLRKLNLLLLQGNHLNSSIPTSLSDLKSLNVLDLSDNRLTGNIPESLCELLPNSINFSNNQLSGPIPLSLIKGGLVESFSGNPGLCVSVYLDASDQKFPICSQNNNKKRLNSIWAIGISAFIILIGAALYLRRRLSREKSVMEQDETLSSSFFSYDVKSFHRISFDPREIIESMVDKNIVGHGGSGTVYKIELSSGEMVAVKRLWSRKGKDTSSDQEQLYLDKELKTEVETLGSIRHKNIVKLYCYFSSLDCSLLVYEYMPNGNLWDALHKGWIHLDWPTRHQIALGIAQGLAYLHHDLLPSIIHRDIKTTNILLDVNYHPKVADFGIAKVLQARTGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGIVLMELITGKKPVEAEFGENKNIIYWVSNKVDTKEGAMEVLDKRVSCSFKDEMIEVLRIAIRCTYKNPALRPTMKEVVQLLIEADPCKFDSHNKSSKHTTTKINNPFDL* 948
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39472827 39477113 + CsaV3_3G048330.1 Csa03g04527 525432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04527 947 ProSiteProfiles Leucine-rich repeat profile. 494 516 IPR001611 GO:0005515
Csa03g04527 947 SUPERFAMILY Protein kinase-like (PK-like) 627 919 IPR011009 -
Csa03g04527 947 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 8 938 - -
Csa03g04527 947 SUPERFAMILY L domain-like 372 537 - -
Csa03g04527 947 SUPERFAMILY L domain-like 166 407 - -
Csa03g04527 947 ProSitePatterns Protein kinases ATP-binding region signature. 646 668 IPR017441 GO:0005524
Csa03g04527 947 SMART serkin_6 640 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04527 947 Gene3D Transferase(Phosphotransferase) domain 1 726 943 - -
Csa03g04527 947 SMART LRR_typ_2 130 154 IPR003591 -
Csa03g04527 947 SMART LRR_typ_2 228 252 IPR003591 -
Csa03g04527 947 SMART LRR_typ_2 276 300 IPR003591 -
Csa03g04527 947 SMART LRR_typ_2 492 516 IPR003591 -
Csa03g04527 947 Gene3D Ribonuclease Inhibitor 20 298 IPR032675 -
Csa03g04527 947 Pfam Protein kinase domain 642 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04527 947 SUPERFAMILY L domain-like 45 219 - -
Csa03g04527 947 Gene3D Ribonuclease Inhibitor 299 562 IPR032675 -
Csa03g04527 947 ProSiteProfiles Protein kinase domain profile. 640 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04527 947 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 938 - -
Csa03g04527 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 769 781 IPR008271 GO:0004672|GO:0006468
Csa03g04527 947 Gene3D Phosphorylase Kinase; domain 1 623 725 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g02237 Csa03g04527 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02237 Csa-Chr2:20106593 Csa03g04527 Csa-Chr3:39472827 0 dispersed
Csa03g04527 Csa-Chr3:39472827 Csa07g00651 Csa-Chr7:4672994 0 dispersed
Csa03g04526 Csa-Chr3:39463518 Csa03g04527 Csa-Chr3:39472827 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78101 PF00069 Pkinase 2.50E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04527 - - csv:101222864 1841.62