Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04539 ATGCTTCTCCGAGCTTCCCCTCTTCTTCGCGCCTCCCACCTTCCATTCCTCTCTGGGATTCACATGGCGCTAGCTCTCCATCTTCCTTTATATCCCAACTATAAAACTTCCACTTCATCTCGATCTTCTTCGCACTTGGTTTCTGTTTGTCAAACGAATTGTTACGACCGTATTTCGGGCAAAATAAATTTTTCACAATTTGTTCGAAATTTCTACGCTTTATCGGGTTCATACAATAAGGTACGGGCGCCTTGTGGAAGGATTTTTTGTGGACAAAGAGAGTATCGAAAGGTGAGGAGACGAGTCCCAAAGAGGAAGATTAAGGAATTAGAGCTCAATGTTAGTATCTGTATTGAAGAAGAGTTGCCGGATGACCCAGAAGTTTTGAGTATTGCAGAAATGCTTCGTTTGAATGTTCCTAAGGCTCTGAAGTTTGCTCTCAACAATTTAAAGGATTCAGAATACAAAACTCGAGATAACTCAATAGATGATGTTGGTTTATTTGATAGTGTCGAGTTGTCCGTACTACTTTGTAATGACGATTTTATTTGTAAACTTAACAAAGAATGGAGGGATGAGGATCATGCCACTGATGTCCTGTCCATGTCACAGCATGTCCCGGAATTGAAGCTTCCAATTCTTATGTTAGGTGATATTGTCATTTCTGTTGAGACTGCTGCAAGGCAGGCGGAGGAAAGGGGACACACACTCCTTGATGAAATTCGGATACTTCTGGTGCATGGATTGTTGCATCTGCTGGGATTTGATCATGAGATTAGTGAAGAGGCTGAAGTAGAAATGGAGAAGGAGGAGGAACTACTGTTGACGAGTTTAGAATGGAGAGGGAAAGGGCTAATTCAGAGTGCAATTGATGCTCAAACCAATTCGGACTCAGCTGCAGTTGTTTCAGATGACAGGAAAAAAGAAGGCAGTCTTCGATTTTATCGCCCAAGGTTCAGCTACATTTTTTGTGATATGGATGGTACATTGCTCAACAGTAAAAGTCAAATTACTCCAACAACTGTCAAGGCTCTGAAGGAGGTCTTGTCAAGGGGTGTGAAAGTTGTTATAGCCACTGGAAAGGCTCGCCCAGCAGTAATTAGCATTTTGGAGAAGGCAGGTTTAGCTGGAAAAGATGGTGCCGTGTCTGAATTTTCTCCTGGAGTCTTCTTACAGGGACTACTCGTTTATGGTAGACAAGGCAAAGAAATTTATAGGCGGAACTTAGACCAAGATGTCTGCAAAGAGGCATGCCTTTATTCCTTAGAGAAGAAAGTTCCTCTGATTGCATTTGGTGAAGGTCGTTGCTTAACTTTATTTGATCATCCACTTACTGATGCATTGCACACTGTATACCATGAGCCCAAGGCAGAGGTCATGCCTTCGGTTGAGAATCTTTTGGCTGCAGCTGAAATACAGAAACTTCTTTTCTTGGACACTGCCGAGGGAGTTTCACACATCCTGCGACCACACTGGTCAGAAGCTGCAGGGGAACACGCTTCGGTTGTTCAAGCTGTACCAGATATGCTTGAGATTGTCCCCCGTGGAACCTCAAAAGGTAGTGGAGTAAGAATGCTGCTCAATCATTTGGGAGTCTCCGCTGAGGAGGTAATGGCTATTGGAGATGGGGAAAACGACATTGAAATGCTGGAGTTGGCATCTCTTGGGATTGCTTTGAGTAATGGATCAGAGAAAACAAAAGCTGTTGCTAACTTAATTGGTCCTAGTAATGATGAAGATGGTGTTGCAGAGGTCATATACCGATATGCATTCTGA 1776 43.19 MLLRASPLLRASHLPFLSGIHMALALHLPLYPNYKTSTSSRSSSHLVSVCQTNCYDRISGKINFSQFVRNFYALSGSYNKVRAPCGRIFCGQREYRKVRRRVPKRKIKELELNVSICIEEELPDDPEVLSIAEMLRLNVPKALKFALNNLKDSEYKTRDNSIDDVGLFDSVELSVLLCNDDFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDEIRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLTSLEWRGKGLIQSAIDAQTNSDSAAVVSDDRKKEGSLRFYRPRFSYIFCDMDGTLLNSKSQITPTTVKALKEVLSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPGVFLQGLLVYGRQGKEIYRRNLDQDVCKEACLYSLEKKVPLIAFGEGRCLTLFDHPLTDALHTVYHEPKAEVMPSVENLLAAAEIQKLLFLDTAEGVSHILRPHWSEAAGEHASVVQAVPDMLEIVPRGTSKGSGVRMLLNHLGVSAEEVMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVAEVIYRYAF* 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39555701 39562968 - CsaV3_3G048450.1 Csa03g04539 525444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04539 591 Pfam haloacid dehalogenase-like hydrolase 322 586 - -
Csa03g04539 591 Gene3D Metalloproteases ("zincins"), catalytic domain 144 280 IPR023091 GO:0004222
Csa03g04539 591 Hamap Endoribonuclease YbeY [ybeY]. 113 287 IPR002036 GO:0004222|GO:0006364
Csa03g04539 591 ProSitePatterns Uncharacterized protein family UPF0054 signature. 247 257 IPR020549 -
Csa03g04539 591 Gene3D - 322 586 IPR023214 -
Csa03g04539 591 TIGRFAM TIGR00043: rRNA maturation RNase YbeY 172 278 IPR002036 GO:0004222|GO:0006364
Csa03g04539 591 ProSitePatterns Hypothetical cof family signature 2. 540 562 - -
Csa03g04539 591 SFLD Haloacid Dehalogenase 322 590 - -
Csa03g04539 591 ProSitePatterns Hypothetical cof family signature 1. 321 332 - -
Csa03g04539 591 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 31 591 - -
Csa03g04539 591 Pfam Endoribonuclease YbeY 167 277 IPR002036 GO:0004222|GO:0006364
Csa03g04539 591 CDD HAD_Pase 322 588 - -
Csa03g04539 591 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 169 282 - -
Csa03g04539 591 TIGRFAM Cof-subfamily: Cof-like hydrolase 321 586 IPR000150 GO:0016787
Csa03g04539 591 SFLD C2.B: Phosphomannomutase and Phosphatase Like 322 590 - -
Csa03g04539 591 Gene3D - 408 515 - -
Csa03g04539 591 SUPERFAMILY HAD-like 317 589 IPR036412 -
Csa03g04539 591 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 321 558 IPR006379 -
Csa03g04539 591 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 31 591 IPR002036 GO:0004222|GO:0006364
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04539 - - - csv:101219624 1101.27
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g30 . . . . . . . . . . . . Car09g00553 . . . Cpe06g00482 . . . . . . . . . . . . . . . . . . Lsi04g02320 Csa03g04539 Chy04g00164 . . . . . . . . . Sed12g1384 . . Cma09g00626 . . . . . Bhi09g02561 Tan01g3910 Cmetu04g0733 . Hepe01g2210 Mch11g0758 . . . . . . . . . . . Cme04g00188
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009056 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 4 1 1 1 1 1 1 1 1 1 1 1 1 32