Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04540 ATGGTCAGATGTCCTGAGCTTCTTGACCTGATCTCCAGAGACAGGGAATGGGATTTGACTAGAAATGGTGTTGGAAGTTCTGTTATTGAGAATAATAAACTTGAATTGAGACTTGGATTGCCAGGAGAAGCAAGTAGTTGTTTGAATGGTAACCATGAAAATGGTGAAATCTCTCTTTCTTCTGCTAAGCCATTTTCTTCTTGTTTCAACATAAGAAGCAATAAAAGGGCTCTTTATGCGAAAACTGAAGGAATAGCTGGAGATGGAAATCGGTTGGATAGAAATGATGAATTCCAACCCCACAAGCTGATTTTCCATGAGAAAACAGCTGAGAAGGTCTCTCCTTTCACTCCCTGTCTTAGTGCTTCCTTACCATCTTCAGCTTTTCATAGGGAAGCTCAGAAGTTATCTCAACCATCTCAATCTTCATATTTGAAACATGTATTGATGCCTCAGAACTTGGATTTGGTGTCAGAGGAGTCATCAAAGCCATGCAGTTTAAAAGCAACTGAGTTGAACTCATGTCTCAACGATGGTTCAGTTCCTGCAGAATCATCTGAAACTAAACACCATGACAAAAGGGCTTCAGTTTCAGCAGCCGTTGGTTGGCCTCCCATCCGTTCTTTCAGGAAAAACTTCGCTGTTCCCCGATCTTCAAAGCCTAACTCTCTGGAATCGTCAAAAGAAACTGTGCAGGATGAGAATGGCTCAAAATTATCTGACTGCTATAATGGACAAATGTTTGTAAAAGTTTGTATGGATGGGGTTCCCATTGGAAGAAAACTAAATCTCCAAGCCTATAATAGTTATGATCAACTGTCTGCTGGCATAGACGAACTCTTCCACAGTCTTCTTGCAGCACAGAGAAACTATCTAGCAGCTGAAGATGGGAGAAAGATGGAGGAAACAACGTCGGTATCTGATTCCAAACACAAAAATGGGCTGTATACTCTAGTTTACTATGATAATGAAGGGGACAGGATGCTTGTTGGTGATGTCCCGTGGAAGATGTTTGTTTCCACTGTGAAGAGGCTACGTGTATTGAAGAGTTCTGTTGTTGCCACTGAAATGAAATGA 1077 41.23 MVRCPELLDLISRDREWDLTRNGVGSSVIENNKLELRLGLPGEASSCLNGNHENGEISLSSAKPFSSCFNIRSNKRALYAKTEGIAGDGNRLDRNDEFQPHKLIFHEKTAEKVSPFTPCLSASLPSSAFHREAQKLSQPSQSSYLKHVLMPQNLDLVSEESSKPCSLKATELNSCLNDGSVPAESSETKHHDKRASVSAAVGWPPIRSFRKNFAVPRSSKPNSLESSKETVQDENGSKLSDCYNGQMFVKVCMDGVPIGRKLNLQAYNSYDQLSAGIDELFHSLLAAQRNYLAAEDGRKMEETTSVSDSKHKNGLYTLVYYDNEGDRMLVGDVPWKMFVSTVKRLRVLKSSVVATEMK* 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39564190 39566583 - CsaV3_3G048460.1 Csa03g04540 525445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04540 358 ProSiteProfiles PB1 domain profile. 246 355 IPR000270 GO:0005515
Csa03g04540 358 SUPERFAMILY CAD & PB1 domains 239 348 - -
Csa03g04540 358 PANTHER AUXIN-RESPONSIVE PROTEIN 7 357 - -
Csa03g04540 358 Pfam AUX/IAA family 34 351 IPR033389 -
Csa03g04540 358 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 357 IPR003311 GO:0005634|GO:0006355
Csa03g04540 358 MobiDBLite consensus disorder prediction 178 197 - -
Csa03g04540 358 MobiDBLite consensus disorder prediction 217 236 - -
Csa03g04540 358 Gene3D - 241 358 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04540 K14484 IAA; auxin-responsive protein IAA - csv:101219386 718.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02355 Csa-Chr3:21272247 Csa03g04540 Csa-Chr3:39564190 5.83E-57 dispersed
Csa03g04540 Csa-Chr3:39564190 Csa03g01265 Csa-Chr3:9663140 1.14E-27 dispersed
Csa03g04540 Csa-Chr3:39564190 Csa02g02232 Csa-Chr2:20037726 3.87E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g11 . . . . . . Bma04g00134 . . . Cma01g01443 . Car09g00554 . . . Cpe06g00483 . . . . . . . . . . . . . . . . . . . Csa03g04540 Chy04g00163 . . . . . . . . . Sed12g1387 . . . . . . . Cpe02g00505 Bhi09g02562 Tan01g3912 Cmetu04g3043 . Hepe01g2211 Mch11g0759 . . . . . . . . . . . Cme04g00187
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014199 0 1 0 0 0 0 2 0 0 1 0 0 0 1 1 1 0 0 2 1 1 1 1 1 1 0 1 3 4 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31433 PF02309 AUX_IAA 5.20E-57 CL0072 Csa TR