Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04541 ATGGGTCGCGCCCTTCTCTCTCACTTTCTCGTCCTCTCACAGTCGTCCACTCGCTTTACACCTTCTCCATCATTGTCTGCATTTGGAACCAAATACACCAAGCCTCATTCGCTCTTCCCGCTTAATCGGTCTTCAACTGGAAATAGTTCCCGATGTTGTTGCGGTATCTCCCTCACCGAACCTGCTGCTGCGCCAGAGCGTCCTCCCAGTTCCATCAAACGGCGGATAGTCTCTGGTGTTCAGCCAACTGGTTCCATTCACCTCGGTAACTATCTAGGTGCAATAAAGAATTGGATTTCACTTCAGGATACATATGATACTCTCTTCTTCATTGTGGATCTTCATGCGATCACATTACCTTATGATACTCAGCAATTACATAAAGCAACAAGAGATACAGCAGCCATTTATTTGGCATGTGGTGTAGATACCTCCAAGGCTTCTGTCTTTGTTCAGTCTCATGTTCGTGCTCATGTAGAGCTGATGTGGTTACTTAGTTCAGCCACACCAATTGGTTGGCTAAACAGGATGATCCAGTTTAAGGAGAAATCACGCAAGGCGGGGGATGAAAATGTTGGCGTTGCACTTCTCACTTATCCTGTCCTAATGGCTTCTGATATTCTTCTGTATCAGTCAGACTATGTCCCTGTTGGTGAGGATCAAAAACAGCATCTTGAGTTGACTCGTGAGCTGGCTGAGCGTGTGAATTATCTATATGGTGGAAGGAAGTGGAAGAAATTAGGAGGGAGAGGTGGGGTTATTTTCAAGGTTCCTGAGCCACTTATACCTCCAGCTGGTGCACGAGTTATGTCCCTCACTGATGGTCTCTCTAAGATGTCGAAATCTGCCCCTTCTGATCAATCCAGAATCAATCTTCTTGACCCCAAAGATGTAATAGCCAACAAGATAAAACGTTGCAAAACTGACTCATTTCCAGGGTTGGAATTTGACAATCCTGAAAGACCTGAATGCAACAATCTTCTTACAATTTACCAACTTGTTTCTGGAAAAGGAAAAGAGGATGTTAAGCAGGAGTGCGAAAATATGAATTGGGGTTCATTTAAAATCCTTCTTACTGATGCTTTGGTCGATCATCTACATCCTATCCAGGTCCGCTATAACGAAATTATATCTGACTCAGCGTTTTTGGATGAAGTCCTTGCCGATGGTGCTAGGAAAGCCTCAAGTATTGCAGATGTTACCGTCAATAATCTCTATCAAGCTATGGGTTTCCTTCGGAGATGA 1245 44.18 MGRALLSHFLVLSQSSTRFTPSPSLSAFGTKYTKPHSLFPLNRSSTGNSSRCCCGISLTEPAAAPERPPSSIKRRIVSGVQPTGSIHLGNYLGAIKNWISLQDTYDTLFFIVDLHAITLPYDTQQLHKATRDTAAIYLACGVDTSKASVFVQSHVRAHVELMWLLSSATPIGWLNRMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDYVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGVIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSFPGLEFDNPERPECNNLLTIYQLVSGKGKEDVKQECENMNWGSFKILLTDALVDHLHPIQVRYNEIISDSAFLDEVLADGARKASSIADVTVNNLYQAMGFLRR* 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39570880 39579062 - CsaV3_3G048470.1 Csa03g04541 525446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04541 414 Hamap Tryptophan--tRNA ligase [trpS]. 73 412 IPR024109 GO:0004830
Csa03g04541 414 Pfam tRNA synthetases class I (W and Y) 75 366 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Csa03g04541 414 PRINTS Tryptophanyl-tRNA synthetase signature 86 102 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Csa03g04541 414 PRINTS Tryptophanyl-tRNA synthetase signature 136 155 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Csa03g04541 414 PRINTS Tryptophanyl-tRNA synthetase signature 213 234 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Csa03g04541 414 PRINTS Tryptophanyl-tRNA synthetase signature 278 288 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Csa03g04541 414 SUPERFAMILY Nucleotidylyl transferase 75 411 - -
Csa03g04541 414 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 82 91 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Csa03g04541 414 Gene3D HUPs 76 410 IPR014729 -
Csa03g04541 414 CDD TrpRS_core 75 363 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Csa03g04541 414 PANTHER BNAA04G15180D PROTEIN 36 411 - -
Csa03g04541 414 Gene3D - 271 381 - -
Csa03g04541 414 TIGRFAM trpS: tryptophan--tRNA ligase 74 411 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Csa03g04541 414 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 36 411 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04541 K01867 WARS, trpS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] - csv:101219148 808.52
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g9 . . . . . . . . . . Cma01g01442 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02321 Csa03g04541 Chy04g00162 . . . Bda01g00942 . . . . . . Cmo01g01496 . . . . . . Cpe02g00506 Bhi09g02566 Tan01g3920 . . . . . . . . . . . . . . . Cme04g00186
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004388 1 5 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 8 1 42