Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04542 ATGGAGCGTCTCCGCCCCAGAGGCAGACAGACGTTTTCTGGGTTCACCAAGGGCGAGATTGAGAAAATGGAGAAGTTGCTAGAGGAATCAGGAGAACAATCGCTTAATCGGGATTTTTGTCAAAAAGTTACCAAACGTTTCAATCGGTCCTCAGGTCGTGCTGGGAAGCCCGTAATAAAGTGGACGGAGGTATATGATTGGTTACAAAGCAGACTGCAAGACCTCCCAAAAATTGAAAAGAGGATATCTGAAATTCCCAAAGCTTGCCCTTCAAATAAGACTCAGGAAAGTTCTCAAGGTCCTGAAGATGAAAAGAGCCCTGATTTGTCAGAATTGGAATTTGAAGCAAGGTCATCAAAAGATGGTGCATGGTATGATGTTGCCATGTTCCTTACACATAGATTTCTTAGTTCTGGCGAAGCTTTCGTGTCAGATTTGTCGGATTTGGAGCTGAAGAAGATGAATGGGTCAACATTAAACAGGCAGTACGAGAACGCTCTGTCCCTCTAG 510 44.31 MERLRPRGRQTFSGFTKGEIEKMEKLLEESGEQSLNRDFCQKVTKRFNRSSGRAGKPVIKWTEVYDWLQSRLQDLPKIEKRISEIPKACPSNKTQESSQGPEDEKSPDLSELEFEARSSKDGAWYDVAMFLTHRFLSSGEAFVSDLSDLELKKMNGSTLNRQYENALSL* 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39580817 39586299 + CsaV3_3G048480.1 Csa03g04542 525447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04542 169 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 9 141 IPR039276 -
Csa03g04542 169 Gene3D - 109 153 - -
Csa03g04542 169 PANTHER OS09G0346900 PROTEIN 9 141 - -
Csa03g04542 169 Pfam SAWADEE domain 111 137 IPR032001 GO:0003682
Csa03g04542 169 MobiDBLite consensus disorder prediction 83 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04542 - - - csv:101218909 288.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04542 Csa-Chr3:39580817 Csa07g02445 Csa-Chr7:22331209 3.03E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g6 . . . . . . . . . . Cma01g01441 . Car09g00555 . . . Cpe06g00484 . . . . . . . . . . . . . . . . . . Lsi04g02322 Csa03g04542 Chy04g00161 . . . . . . . . . . Cmo01g01495 . Cma09g00627 . . . . Cpe02g00507 Bhi09g02568 . . . Hepe01g2213 Mch11g0761 . . . . . . . . . . . Cme04g00185
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007683 2 2 0 2 0 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 35