Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04544 ATGGGGAAGTCAATACCCAAAAGCTGTCATAATCCCATTTTCTTCTTTCTCTTTCTCTTTCTATTGATCCAACATTCATCATCCAGCTCTCTGCAGCAACAACAGCAGCAGCAGCAGCAGCACGACGACCTCCATGAAACCCACCTTCTCTTATCCTTCAAATCCTCCATTTCTAAAAAATCAACCTTTCTCTCCAACTGGAATCCCTCTCTTCCCACCTGCTTATGGAATGGGGTCACATGCAACAACCGCGCCATCTCTAATTTCACTAACATCACTGCCATTAACCTCTCTGCTCAGAATATCACTGGCGTACTTCTGGATTCTCTTTTTCGATTACCTTACATACAATCTCTCGACCTCTCCGACAATCAACTCGTCGGAGAACTCCCTCCGACTATGTTTGCTGTCGCCTCTTCTTCGCTTCTGCATTTGAATTTGAGTAATAATAATTTCACCGGCACACTTCCCACCGGCGGTGTTTCTAGGCTCCGAACATTAGACCTATCCAATAACATGATTTCGGGTTCGATTCCGGAAGATTTTGGATTGTTCTTTGATCTTCTTCAGTTTCTCGATCTGGGTGGGAATGGTTTAATGGGGGAGATTCCGAATTCTGTAGCGAATCTTAGTTCGTTGGAGTTTCTAACGTTGGCGTCTAATAAATTGAGTGGGGAAATTCCGCGGGGATTGGGAGCAATGAAGAGATTGAAGTGGATTTATTTGGGTTATAATAATCTTTCAGGGGAAATTCCTGAAGAACTTGGTGGATTGGATTCTTTGAATCATCTTGATCTTGTGTACAACAAGTTAACAGGGGGAATTCCTGAGTCTCTTGGGAATCTTACTGGACTTCAGTATCTGTTTCTTTATCAAAATGGTCTCACAGGTACAATTCCTCCTTCGATTTTCAGTCTTGTGAATCTGATTTCTCTTGATATTAGTGACAATTCTCTCTCCGGGGAGATTCCAGAGCTTGTAATTCAATTGCAGAATTTGGAGATTCTGCATCTGTTTAGTAATAATTTCACGGGAAAAATTCCAAGAGCTTTGGCTTCTTTGCCTCGACTACAGATTCTTCAGTTATGGTCCAATGGATTTTCCGGCGAAATCCCGGAGTTACTTGGAAGAAACAACAATCTCACCATTCTCGACGTTTCAACTAATTTCCTTACAGGAAAAATCCCAGATGGGCTCTGTGATTCTAAACGTCTTTTTAAGCTTATCCTCTTCTCCAATTCTCTCATCGGCCAAATCCCACGGAGTCTCTGTTCTTGCCAGAGTTTACAACGTGTTCGCCTCCAAAACAACCGTCTCTTCGGTGAATTATCTCCAAAAATATTTACGAAACTGCCACTATTGTACTTTTTAGATATCTCCGACAACCAATTTTCCGGCAGAATCGACAGCAACAAATGGTATTTGCCTTCTCTCCAGATGATGAGTTTAGCGAGAAACAAATTCTCAGGGAACTTGCCGGAATTCATAACAAACGACAAAATCGAGAGTTTGGATTTCTCGGGGAACGAACTTTCAGGTTCCCTCCCGGAGAATATCGGAAGCTTATCAGAACTAATGGAACTTAACTTGAGCAACAACAATCTGGGCGGTGGAATCCCAAATGAAATATCTTCATGTAAGAAGCTCGTTAGTTTAGACCTAAGCCACAATCAACTAAGCGGCGAAATCCCAGTAATTCTCACACAAATTCCCGTCCTTAGCTTCCTTGACTTATCCGAAAACAAATTCTCCGGCGAAATCCCACCAGTTTTAGCCCAAATTCCATCACTCGTTCAGATAAACATTTCCCACAATCACTTACACGGAACATTACCAGCAACAGGAGCGTTTCTGGGTATAAACGCAAGCGCCGTAGCCGGGAATGATCTATGCAGCAACGAGATAATAAGTACAAGCAAATTACCGCCATGCAAGACGCGTCATTACAACAACTTATGGTGGTTTATGATGGTATTAGGCGTTGGCGCGTTATTGATTGGGACAGGAGTGTTGATTACAATACGTCGTCGTAAAGAACCAAAAAGAGTCATAGTAGAAAACAACGACGGAATATGGGAAGTGAAATTCTTCGATTCCAAAGCTGCAAAATTGATGACGGTGGAAGCGATTGTATCCCCGCAATCGCCGTCGTCGGAGATTCAATTCGTGGTGGAGAAAGACGAGGAGAAGTGGAGAGTGGAAGGGAGTTTTTGGAGTGAGGTTGAGGAACTGGGGAGGCTTAAGCATTTGAACGTTGTGAAGTTGTTGGGGTCGTGCCGGTCGGAAAAAGCTGGGTATTTGGTTCGTGAGTATGTGGAAGGGGGAGTTTTGAATGAAATGGTTGGAAGTTTAAGCTGGGAACAACGTCGTAATATCGGTATCGGAATTGCCAGGGCTATGCGGTACTTACATCTCCGGTGTTCTCCGGGAGTAATTGCGTCAAATTTGTCGCCGGAGAGGATAATCGTCGATGAGAAATACCAACCACGGCTCGTTATCGGACTGTCCAAGACCACTATTGCTTCACACTATTCCGCCCCCGAGGTTAAGGAATGTCGAGACGTGACAGAGAGAAGCAATGTATACACTTTGGGAGTTATTCTCATCCAGTTGCTAACCGGCAAAGGACCACTCCATCGCCAACACCTGGTTGAATGGGCTCGCTACTCCTACTCCAATTCTCATATCGACACGTGGATTGATGGCTCGATCATCGCCACAGACCCGAAACAGGTCGTTGGGTTTATGAACTTAGCTCTCAACTTCACCGCAGCTGATCCCATGGCAAGGCCGTCCTCACACCAAGCTTACAAAGCCCTACTTTCTCTCTCTCGAACCACTTGCTCTTCTAAACTTTACTGCACTTAG 2868 44.25 MGKSIPKSCHNPIFFFLFLFLLIQHSSSSSLQQQQQQQQQHDDLHETHLLLSFKSSISKKSTFLSNWNPSLPTCLWNGVTCNNRAISNFTNITAINLSAQNITGVLLDSLFRLPYIQSLDLSDNQLVGELPPTMFAVASSSLLHLNLSNNNFTGTLPTGGVSRLRTLDLSNNMISGSIPEDFGLFFDLLQFLDLGGNGLMGEIPNSVANLSSLEFLTLASNKLSGEIPRGLGAMKRLKWIYLGYNNLSGEIPEELGGLDSLNHLDLVYNKLTGGIPESLGNLTGLQYLFLYQNGLTGTIPPSIFSLVNLISLDISDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPRALASLPRLQILQLWSNGFSGEIPELLGRNNNLTILDVSTNFLTGKIPDGLCDSKRLFKLILFSNSLIGQIPRSLCSCQSLQRVRLQNNRLFGELSPKIFTKLPLLYFLDISDNQFSGRIDSNKWYLPSLQMMSLARNKFSGNLPEFITNDKIESLDFSGNELSGSLPENIGSLSELMELNLSNNNLGGGIPNEISSCKKLVSLDLSHNQLSGEIPVILTQIPVLSFLDLSENKFSGEIPPVLAQIPSLVQINISHNHLHGTLPATGAFLGINASAVAGNDLCSNEIISTSKLPPCKTRHYNNLWWFMMVLGVGALLIGTGVLITIRRRKEPKRVIVENNDGIWEVKFFDSKAAKLMTVEAIVSPQSPSSEIQFVVEKDEEKWRVEGSFWSEVEELGRLKHLNVVKLLGSCRSEKAGYLVREYVEGGVLNEMVGSLSWEQRRNIGIGIARAMRYLHLRCSPGVIASNLSPERIIVDEKYQPRLVIGLSKTTIASHYSAPEVKECRDVTERSNVYTLGVILIQLLTGKGPLHRQHLVEWARYSYSNSHIDTWIDGSIIATDPKQVVGFMNLALNFTAADPMARPSSHQAYKALLSLSRTTCSSKLYCT* 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39605940 39611248 + CsaV3_3G048500.1 Csa03g04544 525449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04544 955 SUPERFAMILY Protein kinase-like (PK-like) 730 944 IPR011009 -
Csa03g04544 955 Pfam Protein kinase domain 724 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04544 955 Gene3D Ribonuclease Inhibitor 445 498 IPR032675 -
Csa03g04544 955 Gene3D Ribonuclease Inhibitor 45 161 IPR032675 -
Csa03g04544 955 ProSiteProfiles Protein kinase domain profile. 660 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g04544 955 SMART LRR_typ_2 330 353 IPR003591 -
Csa03g04544 955 SMART LRR_typ_2 210 234 IPR003591 -
Csa03g04544 955 SMART LRR_typ_2 522 546 IPR003591 -
Csa03g04544 955 SMART LRR_typ_2 594 619 IPR003591 -
Csa03g04544 955 SMART LRR_typ_2 475 499 IPR003591 -
Csa03g04544 955 SMART LRR_typ_2 282 306 IPR003591 -
Csa03g04544 955 SMART LRR_typ_2 161 184 IPR003591 -
Csa03g04544 955 SMART LRR_typ_2 113 137 IPR003591 -
Csa03g04544 955 SMART LRR_typ_2 354 378 IPR003591 -
Csa03g04544 955 Pfam Leucine rich repeat N-terminal domain 45 82 IPR013210 -
Csa03g04544 955 Gene3D Ribonuclease Inhibitor 499 640 IPR032675 -
Csa03g04544 955 Gene3D Ribonuclease Inhibitor 162 253 IPR032675 -
Csa03g04544 955 Gene3D Ribonuclease Inhibitor 329 444 IPR032675 -
Csa03g04544 955 PANTHER UNNAMED PRODUCT 13 943 - -
Csa03g04544 955 Pfam Leucine rich repeat 501 559 IPR001611 GO:0005515
Csa03g04544 955 Gene3D Ribonuclease Inhibitor 254 328 IPR032675 -
Csa03g04544 955 Gene3D Transferase(Phosphotransferase) domain 1 777 952 - -
Csa03g04544 955 PANTHER LEUCINE-RICH REPEAT PROTEIN, PLANT-TYPE-RELATED 13 943 - -
Csa03g04544 955 ProSiteProfiles Leucine-rich repeat profile. 163 185 IPR001611 GO:0005515
Csa03g04544 955 SUPERFAMILY RNI-like 347 609 - -
Csa03g04544 955 Gene3D Phosphorylase Kinase; domain 1 708 776 - -
Csa03g04544 955 PRINTS Leucine-rich repeat signature 164 177 - -
Csa03g04544 955 PRINTS Leucine-rich repeat signature 522 535 - -
Csa03g04544 955 SUPERFAMILY RNI-like 84 394 - -
Csa03g04544 955 Pfam Leucine Rich Repeat 163 182 IPR001611 GO:0005515
Csa03g04544 955 ProSiteProfiles Leucine-rich repeat profile. 548 570 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04544 Csa-Chr3:39605940 Csa03g02633 Csa-Chr3:24824322 7.31E-152 dispersed
Csa02g02250 Csa-Chr2:20181979 Csa03g04544 Csa-Chr3:39605940 3.76E-123 wgd
Csa03g04544 Csa-Chr3:39605940 Csa06g03067 Csa-Chr6:26338997 3.34E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78103 PF00069 Pkinase 2.00E-19 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04544 - - csv:101218670 1765.36