Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04545 ATGATGGCTGTAACCTCTGCCTGCAAGGACGCTGCTAGCAAGATGAGCAGCTTGGATAATGGGAAGTACGTTAGGTACACACCGGAGCAAGTGGAAGCACTTGAGAGGCTTTATTATGAATGTCCAAAACCCAGTTCTATGCGCCGCCAACAGCTTATAAGGGAGTGCCCAATTCTCTCCAACATCGAACCCAAACAGATCAAAGTTTGGTTCCAAAATCGGAGATGTAGAGAGAAGCAGAGGAAGGAAGCATCACGCCTTCAAACTGTGAACAGGAAACTGACAGCTATGAATAGACTCCTAATGGAGGAAAACGATAGGTTGCAGAAACAAGTGTCACAGCTTGTGTATGAGAACAGCTATTTTCGTCAACAAACCCAGAATGCGACCTTAGCCACCACTGACACAAGTTGCGAGTCAGTGGTGACAAGTGGTCAGCAGAATTTGACTCCGCCGCATCCACCAAAGGATGCCAGTCCCGCAGGACTTTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGATGCACTGGAGTTGCTGCTCGTGCATGCGGACTTGTGGGTCTAGAACCTACAAGAGTGGCTGAAATTCTTAAAGATTGGCCTTCTTGGTTTCGCGATTGCCGTGCCGTTGATGTTCTAAATGTCCTATCTACTGGAAATGGAGGAACCATTGAGCTTCTGTACATGCAGCTCTATGCACCTACTACTTTGGCACCTGCTCGTGATTTCTGGCTGCTGCGATACACATCGGTTTTGGAGGATGGTAGTCTTGTGGTCTGTGAAAGATCTCTCAACAATACTCAGAATGGTCCAAGTATGCCTCCAGTCCAAAACTTTGTAAGAGCAGAAATGCTACCAAGTGGCTATTTGATAAGACCTTGTGAAGGTGGTGGATCAATAATCCATATAGTCGATCACATGGACTTAGACCCTTGGAGCGTGCCTGAAGTATTGCGGCCATTGTACAAGTCATCTACTCTGCTTGCTCAGAAGAACACAATGGCAGCATTACGCTTGTTGAGGCAGATTTCACAAGAAGTTTCTCAACCAAATGTTACTGGTTGGGGAAGAAGACCTGCTGCACTTCGTGCTCTTAGTCAGAAATTGAGCAGAGGTTTCAACGAAGCAGTTAATGGGTTTACAGATGAGGGATGGTCTTTGTTAGAAAATGATGGCGTTGATGATGTTACACTTCTTGTAAACATGTCTCATGGCAAGACAATGATGGGTGCAAATATTTCATATTCTAATGGCTTTCCATCCATGAGCAATGCTGTGCTTTGTGCCAAAGCGTCAATGTTATTACAGAATGTTACTCCAGCAATGCTCATCAGGTTCTTGAGAGAACACCGATCGGAATGGGCAGACAGCAGTATTGATGCTTACTCAGCAGCAGCAATTAAGACCGGTCAGTGTGGTTTACCAGGGTCTCATGCTGGAACTTTTGGGGGTCAGGTTATTCTTCCCTTGGCGCAAACAGTTGAGCATGAAGAGTTTATGGAAGTTGTTAAATTTGAAAACGTGGGCCATTATAGGGATGATATGCTTATGCCTGGTGACATTTTCCTCCTCCAACTTTGCAACGGTGTGGACGAAAATACAGTTGGTACTTCGGCTGAACTCATCTTTGCTCCAATTGATGCCTCTTTTTCTGATGATGCACCTATTCTACCATCTGGATTCCGCATCATTCCTCTCGATTCTGGGATGGATGCTTCAAGTCCAAACCGCACACTCGATCTTGCTTCGGCTCTTGATGTTGGACCTGCAGGGAATAGAGCTTCTGGTGATTGCGCTGGTCAATCAGGAAAATCAAAATCTGTGATGACAATTGCATTCCAATTTGTATTTGATGTTCACCTTCAAGATAATGTTGCAGCAATGGCACGGCAATATGTCAGGAGCATTATAGCATCTGTTCAAAGGGTGGCACTGGCTCTTTCCCCTTCAAATTTTGGTCCTCATGCTAACCTTCAGACACCAGCTGGTGCTCCTGAAGCACAAACACTTGCTCGTTGGATCACTCAAAGCTATAGGTGCTATATGGGCATGGAATTACTGAAAAATGAAGGAAGAGAGTCCGTTCTGAAATCCCTTTGGCATCACTCAGATGCAGTCATGTGCTGCTCTTTGAAGGCATTGCCAAATTTTACATTTGCAAATCAATCTGGACTTGACATGCTTGAGACAACCCTGGTGGCTCTCCAAGACATCACTCTGGAGAAGATTTTTGATGACAATGGAAAGAAAACTTTAGCTTCAGAGTTCCCACGGATAATGCAGCAGGGCTTCATTTGTCTTCAAGGGGGTGTCTGCTTATCAAGCATGGGAAGGGCAGTATCCTATGAGAAAGCTGTGGCATGGAAGGTTTTGAATGAAGAAGAAAACGCTCACTGTATTTGTTTCATGTTTATGAATTGGTCTTTTGTTTGA 2529 45.16 MMAVTSACKDAASKMSSLDNGKYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNRLLMEENDRLQKQVSQLVYENSYFRQQTQNATLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWPSWFRDCRAVDVLNVLSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLDPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNVTGWGRRPAALRALSQKLSRGFNEAVNGFTDEGWSLLENDGVDDVTLLVNMSHGKTMMGANISYSNGFPSMSNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADSSIDAYSAAAIKTGQCGLPGSHAGTFGGQVILPLAQTVEHEEFMEVVKFENVGHYRDDMLMPGDIFLLQLCNGVDENTVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSGMDASSPNRTLDLASALDVGPAGNRASGDCAGQSGKSKSVMTIAFQFVFDVHLQDNVAAMARQYVRSIIASVQRVALALSPSNFGPHANLQTPAGAPEAQTLARWITQSYRCYMGMELLKNEGRESVLKSLWHHSDAVMCCSLKALPNFTFANQSGLDMLETTLVALQDITLEKIFDDNGKKTLASEFPRIMQQGFICLQGGVCLSSMGRAVSYEKAVAWKVLNEEENAHCICFMFMNWSFV* 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39619913 39627124 - CsaV3_3G048510.1 Csa03g04545 525450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04545 842 CDD START_ArGLABRA2_like 160 375 - -
Csa03g04545 842 CDD homeodomain 22 82 IPR001356 GO:0003677
Csa03g04545 842 Gene3D - 200 376 IPR023393 -
Csa03g04545 842 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677
Csa03g04545 842 Gene3D - 14 88 - -
Csa03g04545 842 PANTHER CLASS III HD-ZIP PROTEIN CNA1 6 842 - -
Csa03g04545 842 SUPERFAMILY Bet v1-like 165 375 - -
Csa03g04545 842 Coils Coil 91 118 - -
Csa03g04545 842 CDD bZIP 74 113 - -
Csa03g04545 842 ProSiteProfiles START domain profile. 156 370 IPR002913 GO:0008289
Csa03g04545 842 SMART START_1 165 375 IPR002913 GO:0008289
Csa03g04545 842 SMART HOX_1 19 85 IPR001356 GO:0003677
Csa03g04545 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 842 IPR044830 GO:0003700
Csa03g04545 842 SUPERFAMILY Homeodomain-like 21 84 IPR009057 -
Csa03g04545 842 Pfam MEKHLA domain 701 841 IPR013978 -
Csa03g04545 842 Pfam START domain 166 374 IPR002913 GO:0008289
Csa03g04545 842 Pfam Homeodomain 22 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04545 Csa-Chr3:39619913 Csa06g01195 Csa-Chr6:10113736 0 dispersed
Csa03g04545 Csa-Chr3:39619913 Csa07g02448 Csa-Chr7:22354861 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31434 PF01852 START 2.40E-54 CL0209 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04545 K09338 - csv:101218438 1679.84