Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04547 ATGGAAGGACCCGAATATTTCCAGCCCGGTTTTTCTTCTCAATTCTCTACCGAAGACCGTCAGTCCTCCGATGCAAATAAAACTAACACCGCCGCCGCACCTCCCACTACTGCCGACCATTTCATCGTCGAGGACCTTTTGGACTTCTCTAATGACGATGACGTTGTCTTCACCGATGGAACTTTCGATAACCAAACCCCTACTTCTACTGATTCCTCCACTCTTACCTTACTCGATTCATGCAATTCTTACCCCAATACCGGCAATGCCCACAACTATCATTTCGCCGACGCTAATTTCTCTACTGACCTTGGTGTTCCGTACGATGACTTGGCCGAGCTGGAATGGCTTTCAAATTTCGTGGAAGATTCTTTCTCCACCGACGATTTGGAGAAGCTGAGTTTGATTTCCGGGATGAATTCCCGGGCCGATGTCCATGACGATGACGCCTCAAAAGCTCGAGAATTTCAGACCGGATTCAACCGGAACCATTCACCAGGTTTTCGCCACGAAATGTCCGTAGTTCCGGCGAAAGCCGCTCGTAGCAAGCGGTCTAGGGCGGCGCCTTGCATATGGAATTCCCGATTATCCGTACTCTCTCCCACAAATTCCTCTTCCGAAACCGACGTTGTCGTCACGCTCACGCCACATCCAAACACCGCCAAGAAAACCACGAAGAAGAAAGAAATTCCGGATGACACGTCGTCCGCCGCCGGTAATAACGGGGAAGGACGTAAATGTCTCCATTGTGCCACCGACAAAACGCCCCAGTGGCGAACGGGACCAATGGGTCCAAAGACGTTGTGTAATGCTTGTGGGGTCCGGTACAAATCCGGTCGTTTGGTACCGGAATACCGACCGGCGGCGAGCCCAACGTTTGTACTGACAAAACACTCAAATTCTCACCGGAAGGTTATGGAACTCCGGCGACAAAAGGAAATGATGAGAGCACAGCAACAACAACAGTATCTTCATCATGAGAGTATGGGGTTTGATCATGTATCAAACGACGACGATTATTTGATCCATCAACACATAGGCCCACTCTATCAATAG 1056 49.81 MEGPEYFQPGFSSQFSTEDRQSSDANKTNTAAAPPTTADHFIVEDLLDFSNDDDVVFTDGTFDNQTPTSTDSSTLTLLDSCNSYPNTGNAHNYHFADANFSTDLGVPYDDLAELEWLSNFVEDSFSTDDLEKLSLISGMNSRADVHDDDASKAREFQTGFNRNHSPGFRHEMSVVPAKAARSKRSRAAPCIWNSRLSVLSPTNSSSETDVVVTLTPHPNTAKKTTKKKEIPDDTSSAAGNNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRAQQQQQYLHHESMGFDHVSNDDDYLIHQHIGPLYQ* 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39639474 39641795 + CsaV3_3G048530.1 Csa03g04547 525452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04547 351 MobiDBLite consensus disorder prediction 1 35 - -
Csa03g04547 351 MobiDBLite consensus disorder prediction 218 242 - -
Csa03g04547 351 CDD ZnF_GATA 246 293 IPR000679 GO:0006355|GO:0043565
Csa03g04547 351 PIRSF Txn_fac_GATA_plant 21 337 IPR016679 GO:0003677|GO:0005634|GO:0045893
Csa03g04547 351 Gene3D - 242 326 IPR013088 GO:0006355|GO:0008270
Csa03g04547 351 PANTHER GATA TRANSCRIPTION FACTOR 1 350 - -
Csa03g04547 351 ProSitePatterns GATA-type zinc finger domain. 247 272 IPR000679 GO:0006355|GO:0043565
Csa03g04547 351 Pfam GATA zinc finger 247 280 IPR000679 GO:0006355|GO:0043565
Csa03g04547 351 MobiDBLite consensus disorder prediction 9 35 - -
Csa03g04547 351 ProSiteProfiles GATA-type zinc finger domain profile. 241 277 IPR000679 GO:0006355|GO:0043565
Csa03g04547 351 SMART GATA_3 241 291 IPR000679 GO:0006355|GO:0043565
Csa03g04547 351 PANTHER GATA TRANSCRIPTION FACTOR 1 350 - -
Csa03g04547 351 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 242 305 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g02256 Csa03g04547 CCT
Csa02g02256 Csa03g04547 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04547 Csa-Chr3:39639474 Csa05g02806 Csa-Chr5:28608357 1.14E-45 dispersed
Csa02g00998 Csa-Chr2:9621566 Csa03g04547 Csa-Chr3:39639474 6.29E-42 transposed
Csa03g02372 Csa-Chr3:21540331 Csa03g04547 Csa-Chr3:39639474 1.77E-92 transposed
Csa07g02450 Csa-Chr7:22371588 Csa03g04547 Csa-Chr3:39639474 2.57E-98 transposed
Csa02g02256 Csa-Chr2:20219711 Csa03g04547 Csa-Chr3:39639474 4.83E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31435 PF00320 GATA 3.20E-15 CL0167 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04547 - - csv:101221905 668.692