Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04550 ATGCGAGCTTGGGGCAAATGGGTCTCGGAAATCCGTGAGCCACGCAAGAAATCCCGCATTTGGCTCGGTACTTTCCCTACCCCTGAAATGGCCGCTAGAGCCCACGACGTTGCCGCTTTGTCCATTAAAGGTAACTCCGCCATTCTTAACTTCCCTGAACTCGCTCACTCTCTTCCTCGTCCTGTCTCCTTCGCCCCTCGTGACATTCAAGCCGCTGCTTCTAAAGCCGCCCACATGGACTTCAACTTCCATTACTCTTCTACTTCCTCTTCATCTGTTTCCACTTCTTTATCTCCCTCTTCCCCTGAAGACGACGAGGACGGCCACGAACTCAGCGAGATAGTTAAACTCCCTACTCTCGCTTCTTCCAACTACGACGATCACGAATTCGTTCTCATGGACTCCACCGAGGGATGGGTCTACCCACCACCTTGGTTACGAACCATGGAAGATTATTATTACGGCTACCATACCAACAATATCAACGATGAATTGGGAATAATTGGTGATGATGATCATCATAGGTGGGAGGGATTTGATTCAGCTAAGCTTTGA 555 49.55 MRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDIQAAASKAAHMDFNFHYSSTSSSSVSTSLSPSSPEDDEDGHELSEIVKLPTLASSNYDDHEFVLMDSTEGWVYPPPWLRTMEDYYYGYHTNNINDELGIIGDDDHHRWEGFDSAKL* 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39659241 39659880 - CsaV3_3G048560.1 Csa03g04550 525455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04550 184 CDD AP2 1 54 IPR001471 GO:0003700|GO:0006355
Csa03g04550 184 MobiDBLite consensus disorder prediction 87 110 - -
Csa03g04550 184 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 1 161 - -
Csa03g04550 184 MobiDBLite consensus disorder prediction 87 101 - -
Csa03g04550 184 SMART rav1_2 1 58 IPR001471 GO:0003700|GO:0006355
Csa03g04550 184 SUPERFAMILY DNA-binding domain 2 53 IPR016177 GO:0003677
Csa03g04550 184 ProSiteProfiles AP2/ERF domain profile. 1 52 IPR001471 GO:0003700|GO:0006355
Csa03g04550 184 Pfam AP2 domain 3 44 IPR001471 GO:0003700|GO:0006355
Csa03g04550 184 Gene3D AP2/ERF domain 1 53 IPR036955 GO:0003700|GO:0006355
Csa03g04550 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02038 Csa-Chr1:17372663 Csa03g04550 Csa-Chr3:39659241 4.30E-54 dispersed
Csa02g00103 Csa-Chr2:717915 Csa03g04550 Csa-Chr3:39659241 3.61E-44 dispersed
Csa03g02368 Csa-Chr3:21466638 Csa03g04550 Csa-Chr3:39659241 1.10E-42 dispersed
Csa03g04550 Csa-Chr3:39659241 Csa06g00865 Csa-Chr6:6942444 2.84E-34 dispersed
Csa02g02269 Csa-Chr2:20317603 Csa03g04550 Csa-Chr3:39659241 1.94E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31436 PF00847 AP2 2.70E-10 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04550 K09286 - csv:101217333 343.969